View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0482_low_7 (Length: 379)
Name: NF0482_low_7
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 1816120 - 1816444
Alignment:
| Q |
1 |
ttgtttttcatacacttgcaatgtagaaatgttacactttctgcaagtcataaccatccatatagtactttatgagcagttaggataaaagttaaatttt |
100 |
Q |
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| T |
1816120 |
ttgtttttcatacacttacaatgtagaaatgttacactttcagcaagtcataaccatccatatagtactttatgagtagttaggataaaagttaaatgtt |
1816219 |
T |
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| Q |
101 |
tgtcatgatatgatgattatgattgattgacagtgtaaaagctattaatttttcttcccaatcatatatctttattagacttacgttaattaagagagcg |
200 |
Q |
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| T |
1816220 |
tgtcatgatatgatgattatgattgattgacagtgtaaaagctattaatttttcttcccaatcatatatctttattagacttacgttaattaagagagcg |
1816319 |
T |
|
| Q |
201 |
tgaagtgagtgagttaatgaaaagtaagtgtatgtttgaaatttgtttattaattgattagtggaaaacaagcttaaaagacatttagatagtaagagta |
300 |
Q |
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| T |
1816320 |
tgaagtgagtgagctaatgaaaagtaagtgtatgtttgaaatttgtttattaattgattagtggaaaacaagcttaaaagacatttagatagtaagagta |
1816419 |
T |
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| Q |
301 |
gtagcgtaagtgagtcagttactga |
325 |
Q |
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| T |
1816420 |
gtagcgtaagtgagtcagttactga |
1816444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 1816740 - 1816795
Alignment:
| Q |
229 |
tgtatgtttgaaatttgtttattaattgattagtggaaaacaagcttaaaagacat |
284 |
Q |
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| T |
1816740 |
tgtatatttgaattttgtttataaattgattagtacaaaacaagcttaaaagacat |
1816795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 6735393 - 6735428
Alignment:
| Q |
105 |
atgatatgatgattatgattgattgacagtgtaaaa |
140 |
Q |
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| T |
6735393 |
atgatatgatgattatgattggttgacagtgtaaaa |
6735428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 21280184 - 21280236
Alignment:
| Q |
88 |
aaagttaaatttttgtcatgatatgatgattatgattgattgacagtgtaaaa |
140 |
Q |
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| T |
21280184 |
aaagttaattttttttaatgatatgacgattttgattgattgactgtgtaaaa |
21280236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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