View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0482_low_9 (Length: 371)

Name: NF0482_low_9
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0482_low_9
NF0482_low_9
[»] chr8 (7 HSPs)
chr8 (75-278)||(7547834-7548037)
chr8 (150-255)||(32889951-32890056)
chr8 (121-271)||(40028806-40028956)
chr8 (153-255)||(22573135-22573237)
chr8 (133-230)||(11066508-11066605)
chr8 (157-257)||(31734314-31734414)
chr8 (152-255)||(9028646-9028749)
[»] chr7 (8 HSPs)
chr7 (80-278)||(10026414-10026613)
chr7 (87-250)||(39644909-39645073)
chr7 (87-189)||(45980403-45980505)
chr7 (152-257)||(41482432-41482537)
chr7 (130-176)||(47038573-47038619)
chr7 (152-255)||(23318950-23319053)
chr7 (152-255)||(39594635-39594738)
chr7 (152-229)||(24429716-24429793)
[»] chr2 (7 HSPs)
chr2 (75-273)||(16567644-16567843)
chr2 (99-247)||(7670385-7670534)
chr2 (95-271)||(18665144-18665319)
chr2 (95-188)||(38490255-38490345)
chr2 (153-266)||(24447969-24448082)
chr2 (152-230)||(1529690-1529768)
chr2 (153-271)||(40626453-40626571)
[»] chr1 (5 HSPs)
chr1 (123-248)||(50004879-50005004)
chr1 (105-255)||(45792642-45792792)
chr1 (152-255)||(26793757-26793860)
chr1 (198-254)||(20018611-20018667)
chr1 (123-188)||(4950258-4950322)
[»] chr4 (9 HSPs)
chr4 (152-270)||(26635273-26635391)
chr4 (152-271)||(45413782-45413901)
chr4 (152-249)||(19181425-19181522)
chr4 (157-250)||(35320630-35320723)
chr4 (133-230)||(24155193-24155290)
chr4 (196-249)||(26183660-26183713)
chr4 (153-255)||(22202926-22203028)
chr4 (153-251)||(33451327-33451425)
chr4 (141-186)||(29539212-29539257)
[»] chr5 (3 HSPs)
chr5 (130-271)||(13039699-13039840)
chr5 (130-271)||(13109693-13109834)
chr5 (199-247)||(13417063-13417111)
[»] chr3 (2 HSPs)
chr3 (163-271)||(48936324-48936430)
chr3 (95-181)||(44764024-44764111)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 7548037 - 7547834
Alignment:
Q  75 gatgaatgagagacatgagtgatgaattgagagaaagggcaaaatcgaattctagtgctaatcataataggataattctaacccaccaaaaactaaggat 174  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7548037 gatgaatgagagacatgagcgatgaattgagagaaagggcaaaatcgaattctagtgctaatcataataggataattctaacccaccaaaaactaaggat 7547938  T
Q  175 aataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgataatg 274  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7547937 aataatatcaaaggagaagtgggataggataaaaaataggttaaacttatcatttcttgttggtgcaccaaacaacggattaagacaagatatgataatg 7547838  T
Q  275 taat 278  Q
    ||||    
T  7547837 taat 7547834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 32890056 - 32889951
Alignment:
Q  150 ttctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaa 249  Q
    |||||||||||||||| |||||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |||||||    
T  32890056 ttctaacccaccaaaatctaaggataaaaacaacaaaggagaagtgggataggattagaaataggttaaacttatcatttcatattggggcatcaaacaa 32889957  T
Q  250 cggatt 255  Q
    ||||||    
T  32889956 cggatt 32889951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 121 - 271
Target Start/End: Complemental strand, 40028956 - 40028806
Alignment:
Q  121 gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaac 220  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||  |||||||||| |||| |||||||| ||| ||||  ||| ||||| ||||||||     
T  40028956 gaattctagcgctaatcatgataggataattctaacccacaaaatcctaaggataaaaataacaaaggaggagtaggatgagattagaaaaaggttaaag 40028857  T
Q  221 ttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgata 271  Q
    |||||||||| |||||| |||||||||||| |||| || || |||||||||    
T  40028856 ttatcatttcctgttggcgcaccaaacaacagattgaggcaggatatgata 40028806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 22573237 - 22573135
Alignment:
Q  153 taacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacgg 252  Q
    |||||||||||||||||||||||| |||  ||||||   | | ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  22573237 taacccaccaaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttatcatttcctgttggtgcaccaaacaacgg 22573138  T
Q  253 att 255  Q
    |||    
T  22573137 att 22573135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 11066605 - 11066508
Alignment:
Q  133 taatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttc 230  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||| |||| ||||||   ||| ||||||||| ||||||||||| || ||||| ||||    
T  11066605 taatcatgataggataattctaacctaccaaaaattaaggataaaaataacaaaggctgagtaggataggattagaaataggtttaagttatcctttc 11066508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 31734414 - 31734314
Alignment:
Q  157 ccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggatta 256  Q
    |||||||||||||||||||| |||| ||||||     ||||||| |||  |||||||||| || |||||||||| | |||||||||||||||||||||||    
T  31734414 ccaccaaaaactaaggataaaaataacaaagggtggatgggataagattggaaataggtttaatttatcatttcttattggtgcaccaaacaacggatta 31734315  T
Q  257 a 257  Q
    |    
T  31734314 a 31734314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 9028646 - 9028749
Alignment:
Q  152 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 251  Q
    |||||||| ||||||| |||||||| |||  ||||||   | | ||||||||| | ||||||||| || ||||| ||| ||||||||||||||||||||     
T  9028646 ctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaataggtttaaattatccttttatgttggtgcaccaaacaacc 9028745  T
Q  252 gatt 255  Q
    ||||    
T  9028746 gatt 9028749  T

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Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 80 - 278
Target Start/End: Complemental strand, 10026613 - 10026414
Alignment:
Q  80 atgagagacatgagtgatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataata 178  Q
    ||||||||||| |  |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  10026613 atgagagacatcatcgatgaattgagagaaagggcaaaataagaattctagtgctaatcataataggataattctaatccaccaaaaactaaggataaga 10026514  T
Q  179 atatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgataatgtaat 278  Q
    ||| |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  10026513 ataacaaaggaggagtgggatatgattagaaataggttaaacttatcatttcatgttggtgcaccaaacaagggattaagacaagatatgataatctaat 10026414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 39645073 - 39644909
Alignment:
Q  87 acatgagtgatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaa 185  Q
    |||| ||||||||||||| ||| ||||||||||  |||||  |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||    
T  39645073 acataagtgatgaattgaaagagagggcaaaataagaatttaagtgctaatcatgataggataattctaacccaccaaaaactaaggataaaaataacaa 39644974  T
Q  186 aggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaac 250  Q
    ||||  ||| ||||||||| | |||| |||| || ||||| |||  | |||| ||||||||||||    
T  39644973 aggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaac 39644909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 45980403 - 45980505
Alignment:
Q  87 acatgagtgatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaa 185  Q
    ||||||| |||||||||| ||| |||||||| |  ||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||| |||| |||    
T  45980403 acatgagcgatgaattgaaagagagggcaaattaagaattttagtgctaatcatgataggataattct-acccaccaaaaagtaaggataaaaataacaa 45980501  T
Q  186 agga 189  Q
    ||||    
T  45980502 agga 45980505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 257
Target Start/End: Original strand, 41482432 - 41482537
Alignment:
Q  152 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 251  Q
    ||||||||||||||||||||||||| |||| ||||||   ||| ||||| ||| | ||||||||| || ||||| |||| ||||||||||||||||| ||    
T  41482432 ctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggtgcaccaaacagcg 41482531  T
Q  252 gattaa 257  Q
     |||||    
T  41482532 cattaa 41482537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 47038619 - 47038573
Alignment:
Q  130 tgctaatcataataggataattctaacccaccaaaaactaaggataa 176  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||    
T  47038619 tgctaatcatgataggataattctaacccaccaaaaactaaagataa 47038573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 23318950 - 23319053
Alignment:
Q  152 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 251  Q
    |||||||| ||||||| |||||||| |||  ||||||   | | ||||||||| | ||||||||| || ||||| ||||||||||||| ||||||||||     
T  23318950 ctaacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaaca 23319049  T
Q  252 gatt 255  Q
    ||||    
T  23319050 gatt 23319053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 39594738 - 39594635
Alignment:
Q  152 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 251  Q
    |||||||| |||||||||||||||| |||  |||||||  | |  |||| ||| || |||||||| || ||| ||| || | ||||||||||||||||||    
T  39594738 ctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcaccaaacaacg 39594639  T
Q  252 gatt 255  Q
    ||||    
T  39594638 gatt 39594635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 24429793 - 24429716
Alignment:
Q  152 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcattt 229  Q
    ||||||||||||||||||||||||| |||| ||||||   |||  |||||||| | |||||| || || |||||||||    
T  24429793 ctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaattatcattt 24429716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 75 - 273
Target Start/End: Original strand, 16567644 - 16567843
Alignment:
Q  75 gatgaatgagagacatgagtgatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaagga 173  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||  |||||||| ||||||||||||||||||||||| |||||||||||||||| |||    
T  16567644 gatggatgagagacatgagcgatgaattgagagaaagggtaaaataagaattctattgctaatcataataggataattccaacccaccaaaaactatgga 16567743  T
Q  174 taataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgataat 273  Q
    ||| |||| |||||||| |||| |||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||||||||| |||||||||||    
T  16567744 taagaataacaaaggaggagtgagataggattagaaataggttaaacttatccttttctgttggtgcaccaaacaacggattaagacatgatatgataat 16567843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 247
Target Start/End: Complemental strand, 7670534 - 7670385
Alignment:
Q  99 aattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtggg 197  Q
    |||||||||| ||||||||||  | ||| || |||||||||| |||||||||||||||||||||||||| ||||||||| |||  |||| |   | | ||    
T  7670534 aattgagagagagggcaaaataaggattataatgctaatcatgataggataattctaacccaccaaaaattaaggataagaattacaaaagctcaatagg 7670435  T
Q  198 ataggataagaaataggttaaacttatcatttcatgttggtgcaccaaac 247  Q
    ||||||| ||||| ||||||||||||||||||  | ||||||||||||||    
T  7670434 ataggattagaaacaggttaaacttatcattttctattggtgcaccaaac 7670385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 271
Target Start/End: Complemental strand, 18665319 - 18665144
Alignment:
Q  95 gatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaag 193  Q
    ||||||||||||||  |||||||||  | ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| | || ||||||   ||    
T  18665319 gatgaattgagaga--gggcaaaataaggattttagtgctaatcatgataggataattctaacccaccaaaaattaaggataaaattaacaaagggtgag 18665222  T
Q  194 tgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaagatatgata 271  Q
    |  ||||  || ||||||||||| || ||||| |||| | ||||||||| |||||||  ||||   ||||||||||||    
T  18665221 taagatattattagaaataggtttaagttatcctttccttttggtgcacgaaacaacaaattacaccaagatatgata 18665144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 38490255 - 38490345
Alignment:
Q  95 gatgaattgagagaaagggcaaaatcgaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaagg 188  Q
    ||||||||||||||  ||||||||| | ||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||| ||||||    
T  38490255 gatgaattgagaga--gggcaaaataggattttagtgttaatcatgataggataattctaacccaccaaaaactaa-gataaaaataacaaagg 38490345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 24448082 - 24447969
Alignment:
Q  153 taacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacgg 252  Q
    ||||||||||||||  |||||| | |||||||||||||  || ||| ||||| | |||||| |||||||||||||||| | | ||  |||||||||||||    
T  24448082 taacccaccaaaaataaaggattaaaatatcaaaggaggggtaggacaggattacaaatagattaaacttatcatttcctatgggcacaccaaacaacgg 24447983  T
Q  253 attaagacaagata 266  Q
    ||| ||||| ||||    
T  24447982 attgagacaggata 24447969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 1529690 - 1529768
Alignment:
Q  152 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttc 230  Q
    |||||||||||||||  |||||||| || | |||||||| ||| ||||| ||| | ||||| |||||||||||||||||    
T  1529690 ctaacccaccaaaaatcaaggataagaacaacaaaggaggagtaggatatgattaaaaataagttaaacttatcatttc 1529768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 40626571 - 40626453
Alignment:
Q  153 taacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacgg 252  Q
    |||||||||||||  ||||||||| ||||  |||||   ||| ||||||||| |||||||  || || ||||| |||| | ||||||||||||||| | |    
T  40626571 taacccaccaaaatttaaggataaaaataataaagggtgagtaggataggattagaaatatatttaaattatcctttcctattggtgcaccaaacagcag 40626472  T
Q  253 attaagacaagatatgata 271  Q
    ||| |  ||||||||||||    
T  40626471 attgaatcaagatatgata 40626453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 50004879 - 50005004
Alignment:
Q  123 attctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaactt 222  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||   | | ||||||||| ||||||||||| || ||    
T  50004879 attctagtgctaatcatgataggataattctaacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaatt 50004978  T
Q  223 atcatttcatgttggtgcaccaaaca 248  Q
    ||| |||  | |||||||||||||||    
T  50004979 atccttttttattggtgcaccaaaca 50005004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 45792642 - 45792792
Alignment:
Q  105 gagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggatagga 203  Q
    |||| ||||||||||  ||||| || |||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||||   | | ||||||||    
T  45792642 gagagagggcaaaataagaattataatgctaatcatgataggataattctaacccaccaaaaactaaggataagaattacaaaggctcaataggatagga 45792741  T
Q  204 taagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggatt 255  Q
    | ||||| | ||||||||||||||||  ||||||||||||||| ||||||||    
T  45792742 ttagaaacatgttaaacttatcattttctgttggtgcaccaaa-aacggatt 45792792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 26793860 - 26793757
Alignment:
Q  152 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 251  Q
    |||||||||||||||||||| |||| |||| ||||||   | | ||||||||| ||||||| ||| || ||||| |||  | ||||||||||||||||||    
T  26793860 ctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctattggtgcaccaaacaacg 26793761  T
Q  252 gatt 255  Q
    ||||    
T  26793760 gatt 26793757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 20018667 - 20018611
Alignment:
Q  198 ataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggat 254  Q
    ||||||| || |||||||| || ||||||| ||||||||||| ||||||||||||||    
T  20018667 ataggattagtaataggtttaatttatcatatcatgttggtgtaccaaacaacggat 20018611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 4950322 - 4950258
Alignment:
Q  123 attctagtgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaagg 188  Q
    ||||| ||| |||||||  || |||||||||||||||||||||||| ||||||| |||| ||||||    
T  4950322 attctggtgttaatcatggtatgataattctaacccaccaaaaact-aggataaaaataacaaagg 4950258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 152 - 270
Target Start/End: Original strand, 26635273 - 26635391
Alignment:
Q  152 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 251  Q
    ||||||||||||||||||||||||| ||||  ||||||| ||| |||||| ||  ||||||||||||| ||||||| |||||||||||||||||| ||||    
T  26635273 ctaacccaccaaaaactaaggataagaataataaaggaggagtaggatagaattggaaataggttaaatttatcatatcatgttggtgcaccaaaaaacg 26635372  T
Q  252 gattaagacaagatatgat 270  Q
    |||| || || ||||||||    
T  26635373 gattgagtcaggatatgat 26635391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 271
Target Start/End: Original strand, 45413782 - 45413901
Alignment:
Q  152 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 251  Q
    ||||||||||||||||||||||||| |||| ||||||  |  | |||||||||| |||||||||| || ||||| |||| | |||||||||||||||||     
T  45413782 ctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcctttcctattggtgcaccaaacaacc 45413881  T
Q  252 gattaagacaagatatgata 271  Q
    |||| |  ||||||||||||    
T  45413882 gattgaatcaagatatgata 45413901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 19181425 - 19181522
Alignment:
Q  152 ctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaa 249  Q
    |||| ||||||||||||||||| || ||||  ||||||  ||| ||||||||| ||||||||||| || ||||||| |||||||||||||||||||||    
T  19181425 ctaatccaccaaaaactaaggacaaaaataataaaggatgagtaggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaacaa 19181522  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 35320723 - 35320630
Alignment:
Q  157 ccaccaaaaactaaggataataatatcaaag-gagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaac 250  Q
    |||||||||||||||||| | |||| ||||| |||| ||| |||||||| | |||||||||||||||||| |||||||||| |||| ||||||||    
T  35320723 ccaccaaaaactaaggattaaaataacaaagtgaga-gtgagataggattaaaaataggttaaacttatcctttcatgttgctgcagcaaacaac 35320630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 24155290 - 24155193
Alignment:
Q  133 taatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttc 230  Q
    ||||||| ||||||||| ||| |||||||||||||||||||| | ||||||||| |   ||| ||||||||| |||||||| || || ||||||||||    
T  24155290 taatcatgataggataactctgacccaccaaaaactaaggatgaaaatatcaaatgctgagtaggataggattagaaatagctttaagttatcatttc 24155193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 26183713 - 26183660
Alignment:
Q  196 ggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaa 249  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||| |||||||    
T  26183713 ggataggattagaaatatgttaaacttatcatttcctgttggtgcatcaaacaa 26183660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 22203028 - 22202926
Alignment:
Q  153 taacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacgg 252  Q
    |||||||||||||   |||||| | |||| |||| |||  || ||||||||| | ||||||||||||||||||||||||| | |  ||| ||||||||||    
T  22203028 taacccaccaaaagtaaaggattaaaataacaaaagaggggtaggataggattaaaaataggttaaacttatcatttcatatggtcgcaacaaacaacgg 22202929  T
Q  253 att 255  Q
    |||    
T  22202928 att 22202926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 33451425 - 33451327
Alignment:
Q  153 taacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacg 251  Q
    ||||||| |||||||||||||| |||||  |||||||  | | |||||| |  || |||||||| |  ||||||| |||| ||||||||||||||||||    
T  33451425 taacccatcaaaaactaaggattataattacaaaggatgaataggatagaagtagtaataggtttattttatcatatcatattggtgcaccaaacaacg 33451327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 29539257 - 29539212
Alignment:
Q  141 ataggataattctaacccaccaaaaactaaggataataatatcaaa 186  Q
    |||||||||||||||||||||||||| || |||||| |||| ||||    
T  29539257 ataggataattctaacccaccaaaaattagggataaaaataacaaa 29539212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 13039840 - 13039699
Alignment:
Q  130 tgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcattt 229  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| ||||  ||||||    | |||||  || ||||||| ||||||||||||||||    
T  13039840 tgctaatcatgataggaaaattctaacccaccaaaaactaaggataaaaataataaaggatggataggatataattagaaatatgttaaacttatcattt 13039741  T
Q  230 catgttggtgcaccaaacaacggattaagacaagatatgata 271  Q
    | | | || ||||||||||| ||||||||||| |||| ||||    
T  13039740 cctatgggcgcaccaaacaatggattaagacaggataggata 13039699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 13109834 - 13109693
Alignment:
Q  130 tgctaatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcattt 229  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||| |||| ||||||     | ||||| ||| ||||||| ||||||||||||||||    
T  13109834 tgctaatcatgatatgaaaattctaacccaccaaaaactaaggataaaaataacaaagggtggataggatatgattagaaatatgttaaacttatcattt 13109735  T
Q  230 catgttggtgcaccaaacaacggattaagacaagatatgata 271  Q
      | | || ||||||||||| ||||||||||| |||| ||||    
T  13109734 tctatgggcgcaccaaacaatggattaagacaggataggata 13109693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 13417063 - 13417111
Alignment:
Q  199 taggataagaaataggttaaacttatcatttcatgttggtgcaccaaac 247  Q
    |||||| |||||||||||||||||||| |||  ||||||||||||||||    
T  13417063 taggattagaaataggttaaacttatctttttctgttggtgcaccaaac 13417111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 48936324 - 48936430
Alignment:
Q  163 aaaactaaggataataatatcaaaggagaagtgggataggataagaaataggttaaacttatcatttcatgttggtgcaccaaacaacggattaagacaa 262  Q
    |||||||||||||| |||| |||||||||||| ||||||||| | ||| ||||| || |||||  ||| |||||||||||||||||||||||| | |||     
T  48936324 aaaactaaggataaaaataacaaaggagaagtaggataggattaaaaacaggtttaaattatc--ttcctgttggtgcaccaaacaacggattgaaacag 48936421  T
Q  263 gatatgata 271  Q
    |||||||||    
T  48936422 gatatgata 48936430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 44764024 - 44764111
Alignment:
Q  95 gatgaattgagagaaagggcaaaatc-gaattctagtgctaatcataataggataattctaacccaccaaaaactaaggataataata 181  Q
    ||||||| ||||||||||| |||||  ||||| || | |||||||| ||||||||||||||| || ||||||||||||||||| ||||    
T  44764024 gatgaatggagagaaagggtaaaataagaattttaatactaatcatgataggataattctaatccgccaaaaactaaggataaaaata 44764111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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