View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0484_high_13 (Length: 251)

Name: NF0484_high_13
Description: NF0484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0484_high_13
NF0484_high_13
[»] chr3 (3 HSPs)
chr3 (135-251)||(23528876-23528992)
chr3 (77-136)||(43921685-43921744)
chr3 (76-130)||(27044349-27044403)
[»] chr7 (3 HSPs)
chr7 (40-136)||(22291126-22291222)
chr7 (61-130)||(46014552-46014621)
chr7 (44-101)||(44572314-44572371)
[»] chr6 (5 HSPs)
chr6 (40-130)||(34010962-34011052)
chr6 (40-130)||(34013798-34013888)
chr6 (40-136)||(14494187-14494283)
chr6 (78-129)||(17540369-17540420)
chr6 (73-125)||(33234668-33234720)
[»] chr4 (2 HSPs)
chr4 (40-130)||(55680998-55681088)
chr4 (77-125)||(658225-658273)
[»] chr2 (2 HSPs)
chr2 (78-125)||(41849343-41849390)
chr2 (77-125)||(17651604-17651652)
[»] chr1 (1 HSPs)
chr1 (43-125)||(16426747-16426828)
[»] chr8 (1 HSPs)
chr8 (41-93)||(18393356-18393408)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 23528992 - 23528876
Alignment:
Q  135 agctgttgcacaaaacggaaacaaaatggtcaataatgtgattgcaatgcaataattcagccttattttaagtaaaacaaaattgttaagatgaggggga 234  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23528992 agctgttacacaaaacggaaacaaaatggtcaataatgtgattgcaatgcaataattcagccttattttaagtaaaacaaaattgttaagatgaggggga 23528893  T
Q  235 gtccaatcatgggacac 251  Q
    || ||||||||||||||    
T  23528892 gttcaatcatgggacac 23528876  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 43921744 - 43921685
Alignment:
Q  77 agtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacgtctagccctag 136  Q
    |||||||||| |||||| |||||||| ||||||||||||| | |||||| |||| |||||    
T  43921744 agtgtcataggagtgtcggacaccgaagcgtgtcggacaccgtgacacggctagtcctag 43921685  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 27044349 - 27044403
Alignment:
Q  76 gagtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacgtctag 130  Q
    ||||||||||| | ||||  ||||||||||||||| |||||||| ||||||||||    
T  27044349 gagtgtcataggactgtcgaacaccgacgcgtgtctgacactgcaacacgtctag 27044403  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 22291126 - 22291222
Alignment:
Q  40 caattatttacgacaccagttcgacacatatcatacgagtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacgtctagccctag 136  Q
    |||||||||| |||||| |||| |||| | |  |||| ||||||||| |||||| ||||||||||||||||||||||||||||| | |||| |||||    
T  22291126 caattatttaggacaccggttcaacacgtgtggtacgggtgtcataggagtgtcggacaccgacgcgtgtcggacactgcgacatgcctagtcctag 22291222  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 46014552 - 46014621
Alignment:
Q  61 cgacacatatcatacgagtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacgtctag 130  Q
    |||||||| || |||||||||||||| ||| || |||||| ||| |||| ||||||||||||||| ||||    
T  46014552 cgacacatgtcgtacgagtgtcataggagtttcggacaccaacgggtgttggacactgcgacacgcctag 46014621  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 44572371 - 44572314
Alignment:
Q  44 tatttacgacaccagttcgacacatatcatacgagtgtcatagaagtgtctgacaccg 101  Q
    |||||| |||||| ||||||||| | || |||||||||||||| |||||| |||||||    
T  44572371 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccg 44572314  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 34011052 - 34010962
Alignment:
Q  40 caattatttacgacaccagttcgacacatatcatacgagtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacgtctag 130  Q
    |||||||||| |||||| ||||||||| | ||  || |||||||| | |||||| |||||||||||||||||||||| |||||||| ||||    
T  34011052 caattatttaggacaccggttcgacacgtgtcgcacaagtgtcattggagtgtcggacaccgacgcgtgtcggacaccgcgacacgcctag 34010962  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 34013798 - 34013888
Alignment:
Q  40 caattatttacgacaccagttcgacacatatcatacgagtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacgtctag 130  Q
    |||||||||| |||||| ||||||||| | || ||| |||||||| | |||||| ||||||||||| |||||||||| |||||||| ||||    
T  34013798 caattatttaggacaccggttcgacacgtgtcgtacaagtgtcattggagtgtcggacaccgacgcttgtcggacaccgcgacacgcctag 34013888  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 14494283 - 14494187
Alignment:
Q  40 caattatttacgacaccagttcgacacatatcatacgagtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacgtctagccctag 136  Q
    |||||||||| |||||  ||||||||| | || |||| ||||||||| |||||| |||  |||||||||||||| || | ||||||||||| |||||    
T  14494283 caattatttaagacactggttcgacacgtgtcgtacgggtgtcataggagtgtcggacctcgacgcgtgtcggataccgtgacacgtctagtcctag 14494187  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 17540369 - 17540420
Alignment:
Q  78 gtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacgtcta 129  Q
    ||||||||| |||||| |||||||| |||| |||||||||||||||||||||    
T  17540369 gtgtcataggagtgtcggacaccgatgcgtatcggacactgcgacacgtcta 17540420  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 33234720 - 33234668
Alignment:
Q  73 tacgagtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacg 125  Q
    |||||||||| |||| ||||| ||||||||||| |||||||||| ||||||||    
T  33234720 tacgagtgtcttagatgtgtccgacaccgacgcatgtcggacaccgcgacacg 33234668  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 55680998 - 55681088
Alignment:
Q  40 caattatttacgacaccagttcgacacatatcatacgagtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacgtctag 130  Q
    |||||||||| |||| | ||||||||  | || ||| |||||||||| |||||| |||||||||||||||||||||| |||||||| ||||    
T  55680998 caattatttaggacagcggttcgacatgtgtcgtacaagtgtcataggagtgtcggacaccgacgcgtgtcggacaccgcgacacgcctag 55681088  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 658273 - 658225
Alignment:
Q  77 agtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacg 125  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  658273 agtgtcatagaagtgtcggacaccgacacgtgtcggacactgcgacacg 658225  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 41849343 - 41849390
Alignment:
Q  78 gtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacg 125  Q
    ||||||||| |||||| |||||||||||||||| ||||| ||||||||    
T  41849343 gtgtcataggagtgtcggacaccgacgcgtgtctgacaccgcgacacg 41849390  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 17651604 - 17651652
Alignment:
Q  77 agtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacg 125  Q
    |||||||||  |||||| ||||| |||||||||||||||| ||||||||    
T  17651604 agtgtcataagagtgtcggacactgacgcgtgtcggacaccgcgacacg 17651652  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 16426747 - 16426828
Alignment:
Q  43 ttatttacgacaccagttcgacacatatcatacgagtgtcatagaagtgtctgacaccgacgcgtgtcggacactgcgacacg 125  Q
    ||||||| |||||  ||||||||||| || ||||||| |||||| |||||| |||||| |||| |||| ||||| ||||||||    
T  16426747 ttatttatgacacttgttcgacacatgtcgtacgagt-tcataggagtgtcggacaccaacgcctgtcagacaccgcgacacg 16426828  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 18393408 - 18393356
Alignment:
Q  41 aattatttacgacaccagttcgacacatatcatacgagtgtcatagaagtgtc 93  Q
    ||||||||| ||||| |||||||||| | || |||||||||||||| ||||||    
T  18393408 aattatttaggacactagttcgacacgtgtcgtacgagtgtcataggagtgtc 18393356  T

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