View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0484_low_10 (Length: 291)
Name: NF0484_low_10
Description: NF0484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0484_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 23466167 - 23466397
Alignment:
| Q |
19 |
atgacactatgaatttgtcattatgtgtggtcagatcagatgcataatgtgtaagacgccggctgaataaaat--ggcaacaagagaatatttagacaaa |
116 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23466167 |
atgacattatgaatttgtcatcatgtgtggtcagatcagatgcataatgtgtaagacgccggctgaataaaatatggcaacaagagaatatttagacaaa |
23466266 |
T |
|
| Q |
117 |
caatgatgcacataatatagtgtgaatctaatttcctatattaaactaaatagttgttacataaggttccatttctttctatttgnnnnnnnaccaatca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23466267 |
caatgatgcacataatatagtgtgaatctaatttcctatattaaactaaatagttgttacataaggttccatttctttctatttgtttttttaccaatca |
23466366 |
T |
|
| Q |
217 |
aattcagtaacctttaaacaaatatcatata |
247 |
Q |
| |
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|||| |||||||||||||||||||||||||| |
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| T |
23466367 |
aattaagtaacctttaaacaaatatcatata |
23466397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 23407500 - 23407753
Alignment:
| Q |
18 |
tatgacactatgaatttgtcattatgtgtggtcagatcagatgcataatgtgtaagacgccggctgaataaa--atggcaacaagagaatatttagacaa |
115 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23407500 |
tatgacattatgaatttgtcattatgtgtggtcagatcagacgcataatgtgtaagacgccggctgaataaaatatggcaacaagagaatatttagacaa |
23407599 |
T |
|
| Q |
116 |
acaatgatgcacataatatagtgtgaatcta---atttccta---tattaaactaaatagttgttacataaggttccatttctttctatttgnnnnnnna |
209 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
23407600 |
acaatgatgcacataatatagtgtgaatctaaatatttcctatattattaaactaaatagttgttacaggaggttccatttctttctatttgttttttta |
23407699 |
T |
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| Q |
210 |
ccaatcaaattcagtaacctttaaacaaatatcatatagttgaacggtgaatct |
263 |
Q |
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| T |
23407700 |
ccaatcaaattcagtaacctttaaacaaatatcatatagttgaacggtgaatct |
23407753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 23429559 - 23429786
Alignment:
| Q |
26 |
tatgaatttgtcattatgtgtggtcagatcagatgcataa-tgtgtaagacgccggctgaataaaat--ggcaacaagagaatatttagacaaa-caatg |
121 |
Q |
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||||| |||||| |||| ||||| |||||| |||||||| ||| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| ||| | |
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| T |
23429559 |
tatgagtttgtcggtatgcgtggtaagatcaaatgcataaatgtttaagacgccggctgaataaaatatggctacaagaggatatttagaaaaaacaacg |
23429658 |
T |
|
| Q |
122 |
atgcacataatatagtgtgaatctaatttcctatattaaactaaatagttgttacataaggttccatttctttctatttgnnnnnnnaccaatcaaattc |
221 |
Q |
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|||||| || || |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
23429659 |
atgcactta---taatgtgaatctaatttcctatactaaactaagtagttgttacaccaggttccatttctttctatttg-tttcttaccaatcaaattc |
23429754 |
T |
|
| Q |
222 |
agtaacctttaaacaaatatcatatagttgaa |
253 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
23429755 |
agtaacctttaaacaaatatcatatagttgaa |
23429786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 23389770 - 23389998
Alignment:
| Q |
26 |
tatgaatttgtcattatgtgtggtcagatcagatgcataa-tgtgtaagacgccggctgaataaaat--ggcaacaagagaatatttagacaaa-caatg |
121 |
Q |
| |
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||||| |||||| |||| ||||| |||||| |||||||| ||| ||||||| |||||||||||||| ||| ||||||| ||||||||| ||| ||| | |
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| T |
23389770 |
tatgagtttgtcggtatgcgtggtaagatcaaatgcataaatgtttaagacgacggctgaataaaatatggctacaagaggatatttagaaaaaacaacg |
23389869 |
T |
|
| Q |
122 |
atgcacataatatagtgtgaatctaatttcctatattaaactaaatagttgttacataaggttccatttctttctatttgnnnnnnnaccaatcaaattc |
221 |
Q |
| |
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|||||| || || |||||||||| ||||||||| |||||||| ||||||||||| ||||||||||| |||||||||| | ||||||||||| |
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| T |
23389870 |
atgcactta---taatgtgaatctagtttcctatactaaactaagtagttgttacaccaggttccatttttttctatttg-tttcttagcaatcaaattc |
23389965 |
T |
|
| Q |
222 |
agtaacctttaaacaaatatcatatagttgaac |
254 |
Q |
| |
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||||||||||||||||||| ||||| ||||||| |
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| T |
23389966 |
agtaacctttaaacaaataccatatggttgaac |
23389998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 23444552 - 23444667
Alignment:
| Q |
136 |
gtgtgaatctaatttcctatattaaactaaatagttgttacataaggttccatttctttctatttgnnnnnnnaccaatcaaattcagtaacctttaaac |
235 |
Q |
| |
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||||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
23444552 |
gtgtgaatctaattttctatattaaagtaaatagttgttacatgagg-tccatttctttttatttg-tttcttaccaatcaatttcagtaacctttaaac |
23444649 |
T |
|
| Q |
236 |
aaatatcatatagttgaa |
253 |
Q |
| |
|
|||| |||||| |||||| |
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| T |
23444650 |
aaatgtcatattgttgaa |
23444667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 23489582 - 23489697
Alignment:
| Q |
136 |
gtgtgaatctaatttcctatattaaactaaatagttgttacataaggttccatttctttctatttgnnnnnnnaccaatcaaattcagtaacctttaaac |
235 |
Q |
| |
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||||||||||||||| |||||||||||||||||| ||||| || ||| ||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
23489582 |
gtgtgaatctaattttctatattaaactaaatagctgttagatgagg-tccatttctttttatttg-tttcttaccaatcaatttcagtaacctttaaac |
23489679 |
T |
|
| Q |
236 |
aaatatcatatagttgaa |
253 |
Q |
| |
|
|||| |||||| |||||| |
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|
| T |
23489680 |
aaatgtcatattgttgaa |
23489697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 23489411 - 23489475
Alignment:
| Q |
27 |
atgaatttgtcattatgtgtggtcagatcagatgcat-aatgtgtaagacgccggctgaataaaa |
90 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||| |||||||||||||| || ||||||||| |
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| T |
23489411 |
atgaatttgtcaatatgcgtggtcagatcagatgcataaatgtgtaagacgctgggtgaataaaa |
23489475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 23436878 - 23436971
Alignment:
| Q |
96 |
acaagagaatatttagacaaacaatgatgcacataatatagtgtgaatctaatttcctatattaaac-taaatagttgttacataaggttccatt |
189 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||| | ||||||||||||||| |||||||| |||||| ||||| ||| | |||||||||||||| |
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|
| T |
23436878 |
acaagaggatatttaggaaaacaatgatgtacaca-tatagtgtgaatctagtttcctatgttaaacgaaaataattggtgcataaggttccatt |
23436971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 23444431 - 23444470
Alignment:
| Q |
26 |
tatgaatttgtcattatgtgtggtcagatcagatgcataa |
65 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
23444431 |
tatgaatttgtcaatatgcgtggtcagatcagatgcataa |
23444470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 23475532 - 23475576
Alignment:
| Q |
48 |
gtcagatcagatgcataa-tgtgtaagacgccggctgaataaaat |
91 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||||| |||||| |
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|
| T |
23475532 |
gtcagatcagatgcataaatgtgcaagacgccggctgattaaaat |
23475576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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