View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0484_low_15 (Length: 272)
Name: NF0484_low_15
Description: NF0484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0484_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 361041 - 361119
Alignment:
| Q |
41 |
ataaagaacaggatcggaaaagatacgcccatgatgctcggctattctgatgtaacaaaacaacaatatccatggcgac |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
361041 |
ataaagaacagaatcggaaaagatacgcccatgatgctcggctattctgatgtaacaaaacaacaatatccatggcgac |
361119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 361113 - 361160
Alignment:
| Q |
206 |
tggcgactttgacaaagataaattaacgccataaacctatgggatcta |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
361113 |
tggcgactttgacaaagataaattaacgccataaacctatgggatcta |
361160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1743 times since January 2019
Visitors: 3462