View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0484_low_16 (Length: 260)
Name: NF0484_low_16
Description: NF0484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0484_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 34729210 - 34729018
Alignment:
| Q |
25 |
atactaaaagtcattttatttgtcatatgtcaaagtgcagtggtaattttgaacattgtagagcctgtttgggaattattttcatctcatttctgtttcc |
124 |
Q |
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| T |
34729210 |
atactaaaagtcattttatttgtcatatgtcaaagtgcagtggtaattttgaacattgtagagcccgtttgggaattattttcatctcatttctgtttcc |
34729111 |
T |
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| Q |
125 |
aaatatcggtaaccttcaataaaggatttaaaggatatacagtgttggtgtaaaatagttttacattgactgacatccaatgaaaacctattgtttt |
221 |
Q |
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| T |
34729110 |
aaatattggtaaccttcaataaaggatttaaaggatatacagtgttggtgtaaaatagttttacattgag----atccaatgaaaacctattgtttt |
34729018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 34724896 - 34724851
Alignment:
| Q |
172 |
gtgtaaaatagttttacattgactgacatccaatgaaaacctattgtttt |
221 |
Q |
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| T |
34724896 |
gtgtaaaatagttttaca----ctaacatccaatgaaaacctattgtttt |
34724851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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