View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0484_low_19 (Length: 251)

Name: NF0484_low_19
Description: NF0484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0484_low_19
NF0484_low_19
[»] chr1 (24 HSPs)
chr1 (1-223)||(8941956-8942178)
chr1 (1-223)||(8932040-8932262)
chr1 (1-223)||(8955962-8956184)
chr1 (1-223)||(8920635-8920857)
chr1 (4-221)||(9318241-9318458)
chr1 (27-221)||(9453775-9453969)
chr1 (4-221)||(9432788-9433005)
chr1 (4-221)||(9319844-9320061)
chr1 (4-221)||(9350161-9350378)
chr1 (79-191)||(9096790-9096902)
chr1 (4-173)||(9255027-9255196)
chr1 (4-221)||(9399574-9399791)
chr1 (79-191)||(9104972-9105084)
chr1 (76-206)||(9488564-9488694)
chr1 (4-221)||(9486140-9486357)
chr1 (79-206)||(8964529-8964656)
chr1 (79-206)||(8999680-8999807)
chr1 (71-206)||(9056570-9056705)
chr1 (79-218)||(9142825-9142964)
chr1 (76-167)||(9234064-9234155)
chr1 (76-167)||(9384239-9384330)
chr1 (88-206)||(8874034-8874152)
chr1 (79-185)||(10974263-10974369)
chr1 (76-185)||(9463970-9464078)
[»] chr3 (1 HSPs)
chr3 (4-221)||(9159534-9159751)
[»] chr6 (1 HSPs)
chr6 (4-221)||(15927147-15927364)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8941956 - 8942178
Alignment:
Q  1 ttgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8941956 ttgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagc 8942055  T
Q  101 tatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8942056 tatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgtacctctagcagcggtcatagttacaat 8942155  T
Q  201 gctattttcaataggataaagtt 223  Q
    |||||||||||||||||||||||    
T  8942156 gctattttcaataggataaagtt 8942178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8932040 - 8932262
Alignment:
Q  1 ttgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8932040 ttgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgctatttccattaagagcattccaaagc 8932139  T
Q  101 tatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaat 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  8932140 tatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtcaaagttacaat 8932239  T
Q  201 gctattttcaataggataaagtt 223  Q
    |||||| ||||  ||||||||||    
T  8932240 gctattgtcaactggataaagtt 8932262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8955962 - 8956184
Alignment:
Q  1 ttgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8955962 ttgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgctatttccattaagagcattccaaagc 8956061  T
Q  101 tatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaat 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||| |||| |||||||||    
T  8956062 tatacacatcggccttataggaaactttaccaatatttttgtagaataattccggagccatgtaaccaattgttcctcttgcagccgtcaaagttacaat 8956161  T
Q  201 gctattttcaataggataaagtt 223  Q
    |||||| |||| |||||||||||    
T  8956162 gctattgtcaacaggataaagtt 8956184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8920635 - 8920857
Alignment:
Q  1 ttgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagc 100  Q
    ||||| ||||||||||||||||||||||||  |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  8920635 ttgtagatccaatagggaaagaaaatttggtctgaatcatttgcatttgagttcaaatttcttctcctgtttgctatttccatcaagagcattccaaagc 8920734  T
Q  101 tatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaat 200  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  8920735 tatatacatcggccttataggagactttaccaatatttttgtagaacaactctggtgccatgtaaccaattgttcctcttgcagcagtcaaagttacaat 8920834  T
Q  201 gctattttcaataggataaagtt 223  Q
    |||||| ||||  ||||||||||    
T  8920835 gctattgtcaactggataaagtt 8920857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 9318458 - 9318241
Alignment:
Q  4 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 103  Q
    |||||||||  ||||||||||||||| ||||||  ||| |||| ||  |||||||||||| || |  |||| |||||||| || ||||||||||||||||    
T  9318458 taaatccaaatgggaaagaaaatttgacttgaacgatcggcatgtggatttaaatttcttttcttacttgccatttccatcaaaagcattccaaagctat 9318359  T
Q  104 acacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaatgct 203  Q
    | |||||||| || ||||| |||   ||||||||||||||||||||||| || |||||||| ||||||||||||||||| || || | ||| ||||||||    
T  9318358 atacatcggccttgtaggatactcctccaatatttttgtagaacaattcaggagccatgtatccaattgttcctctagctgcagttaaagtgacaatgct 9318259  T
Q  204 attttcaataggataaag 221  Q
    | | ||| | ||||||||    
T  9318258 aatgtcatttggataaag 9318241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 9453969 - 9453775
Alignment:
Q  27 ttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagctatacacatcggctttataggaaact 126  Q
    |||||||||||  || |||| ||| || |||||||| |||||  |||| ||||| || |  ||||||||||| |||||||||||||| || |  || | |    
T  9453969 ttggcttgaatgctcagcatgtgaattcaaatttctactcctacttgcaatttcaatcagaagcattccaaaactatacacatcggccttgtgtgatatt 9453870  T
Q  127 ttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaatgctattttcaataggataaag 221  Q
     | |||||||||| |||||||||||| || ||||||||||||||||||||||| || || |||| ||  ||||||||||| ||||||||||||||    
T  9453869 ctcccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgctgtcaaagcgacaatgctattgtcaataggataaag 9453775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 9433005 - 9432788
Alignment:
Q  4 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 103  Q
    ||||||||| |||| ||  ||| ||| |||||||  || |||| ||| || ||||||||||| ||  |||| ||||| || || ||||||||||| ||||    
T  9433005 taaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttcttctacttgcgatttcaatcaaaagcattccaaaactat 9432906  T
Q  104 acacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaatgct 203  Q
    |||||||||| || |  || | | | |||||||||| |||||||||||| || ||||||||||||||||||||||| || || |||| |||  |||||||    
T  9432905 acacatcggccttgtgtgatattctcccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgccgtcaaagtggcaatgct 9432806  T
Q  204 attttcaataggataaag 221  Q
     || ||||||||||||||    
T  9432805 tttgtcaataggataaag 9432788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 9319844 - 9320061
Alignment:
Q  4 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 103  Q
    |||||||||  ||||||||||||||| ||||||   || |||| ||  ||||| |||||| || |  |||| |||||||| || |||||||| |||||||    
T  9319844 taaatccaaatgggaaagaaaatttgacttgaacgttcggcatgtggatttaagtttcttttcttacttgccatttccatcaaaagcattccgaagctat 9319943  T
Q  104 acacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaatgct 203  Q
    | ||||| || || ||||| |||   ||||||||||||||||||||||| || ||||| || |||||||||||||| || || || | ||| ||||||||    
T  9319944 atacatcagccttgtaggatactcctccaatatttttgtagaacaattcaggagccatatatccaattgttcctcttgctgcagttaaagtgacaatgct 9320043  T
Q  204 attttcaataggataaag 221  Q
    | | ||| ||||||||||    
T  9320044 aatctcattaggataaag 9320061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 9350161 - 9350378
Alignment:
Q  4 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 103  Q
    |||||||||  ||||||||||||||| ||||||   || |||| ||  |||||||||||| || |  |||| |||||||| || |||||||| |||||||    
T  9350161 taaatccaaatgggaaagaaaatttgacttgaacgttcggcatgtggatttaaatttcttttcttacttgcgatttccatcaaaagcattccgaagctat 9350260  T
Q  104 acacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaatgct 203  Q
    | ||||| || || ||||| |||   |||||||||||||||||||| || || ||||| || |||||||||||||| || || || | ||| ||||||||    
T  9350261 atacatcagccttgtaggatactcctccaatatttttgtagaacaactcaggagccatatatccaattgttcctcttgctgcagttaaagtgacaatgct 9350360  T
Q  204 attttcaataggataaag 221  Q
    | | ||| ||||||||||    
T  9350361 aatctcattaggataaag 9350378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 9096902 - 9096790
Alignment:
Q  79 tccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 178  Q
    ||||| || ||||| ||||||||||| ||||| |||||||||||||||   |||||||||||||||||||||||||| ||||| || |||||||| ||||    
T  9096902 tccatcaaaagcatcccaaagctataaacatcagctttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctc 9096803  T
Q  179 tagcagcggtcat 191  Q
    | ||||| |||||    
T  9096802 ttgcagcagtcat 9096790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 9255196 - 9255027
Alignment:
Q  4 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 103  Q
    |||||||||  ||||||||||||||| ||||||  ||| |||| ||  |||||||||||| || |  |||| ||||| || || ||||||||||||||||    
T  9255196 taaatccaaatgggaaagaaaatttgacttgaacgatcggcatgtggatttaaatttcttttcttacttgccatttcaatcaaaagcattccaaagctat 9255097  T
Q  104 acacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgt 173  Q
    | |||||||| || || || |||   |||||||||| |||||||||||| || |||||||| ||||||||    
T  9255096 atacatcggccttgtacgatactcctccaatattttggtagaacaattcaggagccatgtatccaattgt 9255027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 9399574 - 9399791
Alignment:
Q  4 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 103  Q
    ||||||||| |||| ||  ||| ||| |||||||  || |||| ||| || ||||||||||||||  |||| ||||| || || ||||| ||||||||||    
T  9399574 taaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttctcctacttgcaatttcaatcaaaagcataccaaagctat 9399673  T
Q  104 acacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaatgct 203  Q
    ||||||| || ||||| || | |   |||||||||| | |||||| ||| || ||||||||||||||||||||||| || ||  ||| |||  |||||||    
T  9399674 acacatcagccttatatgatattcccccaatattttggaagaacagttcaggagccatgtaaccaattgttcctcttgctgccatcaaagtggcaatgct 9399773  T
Q  204 attttcaataggataaag 221  Q
     || ||||||||||||||    
T  9399774 tttgtcaataggataaag 9399791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 9105084 - 9104972
Alignment:
Q  79 tccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 178  Q
    ||||| || ||||| ||||||||||| ||||| || ||||||||||||   |||||||||||||||||||||||||| ||||| || |||||||| ||||    
T  9105084 tccatcaaaagcatcccaaagctataaacatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctc 9104985  T
Q  179 tagcagcggtcat 191  Q
    | ||||| |||||    
T  9104984 ttgcagcagtcat 9104972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 9488564 - 9488694
Alignment:
Q  76 atttccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 175  Q
    ||||||||||| | ||||||||||||||| ||||| ||||| || || |||   |||||||| || ||||||||||||||||||||||| || || ||||    
T  9488564 atttccattaacaacattccaaagctataaacatctgctttgtacgatactcctccaatattcttatagaacaattctggtgccatgtatcccatagttc 9488663  T
Q  176 ctctagcagcggtcatagttacaatgctatt 206  Q
    |||| ||||| || | ||  |||||||||||    
T  9488664 ctcttgcagctgtaagagacacaatgctatt 9488694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 9486357 - 9486140
Alignment:
Q  4 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 103  Q
    ||||||||| |||||||| ||| ||| |||||||  || |||| ||  || ||||||||||| ||  |||| ||||| || || ||||||||||||||||    
T  9486357 taaatccaaaagggaaagtaaagttgacttgaatgctcagcatgtgtattcaaatttcttcttctacttgccatttcaatcaaaagcattccaaagctat 9486258  T
Q  104 acacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaatgct 203  Q
    |||  || || || || || | |   || ||||||| |||||||||||| || ||||||||||| ||||||||||| || || ||||  ||  |||||||    
T  9486257 acatgtcagccttgtatgatattcctccgatattttggtagaacaattcaggagccatgtaaccgattgttcctcttgctgctgtcaaggtggcaatgct 9486158  T
Q  204 attttcaataggataaag 221  Q
     || ||||||||||||||    
T  9486157 tttgtcaataggataaag 9486140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 8964529 - 8964656
Alignment:
Q  79 tccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 178  Q
    ||||| || ||||| ||||||||||| ||||| || |||||||| |||   ||||||||||| |||||||||||||| ||||| || ||||| || ||||    
T  8964529 tccatcaaaagcatcccaaagctataaacatcagccttataggacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctc 8964628  T
Q  179 tagcagcggtcatagttacaatgctatt 206  Q
    | || || ||||| || |||||||||||    
T  8964629 ttgccgctgtcattgtgacaatgctatt 8964656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 8999680 - 8999807
Alignment:
Q  79 tccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 178  Q
    ||||| || ||||| ||||||||||| ||||| || ||||| || |||   ||||||||||| |||||||||||||| ||||| || ||||| || ||||    
T  8999680 tccatcaaaagcatcccaaagctataaacatcagccttataagacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctc 8999779  T
Q  179 tagcagcggtcatagttacaatgctatt 206  Q
    | || || ||||| || |||||||||||    
T  8999780 ttgccgcagtcattgtgacaatgctatt 8999807  T

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Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 9056570 - 9056705
Alignment:
Q  71 ttgctatttccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaat 170  Q
    |||| |||||||| || ||||| ||||| ||||| ||||| || ||||| || |||  ||||||||||||||| |||||||| || ||||| || |||||    
T  9056570 ttgccatttccatcaaaagcataccaaaactataaacatcagccttatacgacactccaccaatatttttgtaaaacaattcaggagccatatatccaat 9056669  T
Q  171 tgttcctctagcagcggtcatagttacaatgctatt 206  Q
    ||| ||| | || || ||||| || |||||||||||    
T  9056670 tgtgcctttggctgcagtcattgtgacaatgctatt 9056705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 9142964 - 9142825
Alignment:
Q  79 tccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 178  Q
    ||||| || ||||| || || ||||| |||||||| |||||||| |||   |||||||||||||||||||| || || ||||| || ||||| || ||||    
T  9142964 tccatcaaaagcatcccgaaactataaacatcggccttataggacactcccccaatatttttgtagaacaactccggagccatatatccaatagtacctc 9142865  T
Q  179 tagcagcggtcatagttacaatgctattttcaataggata 218  Q
    | || || ||||| || ||||||||||| ||||| |||||    
T  9142864 ttgctgcagtcattgtgacaatgctattctcaatcggata 9142825  T

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Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 9234155 - 9234064
Alignment:
Q  76 atttccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaacc 167  Q
    |||||||| || ||||||||||| || || ||||| ||||| || || |||  |||||||||||||||||||||||| || |||||||||||    
T  9234155 atttccatcaaaagcattccaaaactgtatacatcagctttgtacgacactccaccaatatttttgtagaacaattcaggagccatgtaacc 9234064  T

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Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 9384239 - 9384330
Alignment:
Q  76 atttccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaacc 167  Q
    |||||||| || ||||||||||||||||| ||||| || || || || |||  |||||||||||||||||||| ||| || |||||||||||    
T  9384239 atttccatcaaaagcattccaaagctatatacatcagccttgtaagacactccaccaatatttttgtagaacagttcaggagccatgtaacc 9384330  T

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Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 8874152 - 8874034
Alignment:
Q  88 agcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcgg 187  Q
    ||||| ||||| ||||| ||||| || |||||||| |||  |||||||||||| || ||||||||||| ||||| || ||||| || ||||| || || |    
T  8874152 agcatcccaaaactataaacatcagccttataggacactccaccaatatttttataaaacaattctggagccatatatccaatggtacctcttgccgcag 8874053  T
Q  188 tcatagttacaatgctatt 206  Q
    |||| || |||||||||||    
T  8874052 tcattgtgacaatgctatt 8874034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 10974263 - 10974369
Alignment:
Q  79 tccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 178  Q
    |||||||| | ||| ||||||||||| ||||| ||||| || || | | | ||||||||| ||||||||| ||| || |||||||| ||||| |||||||    
T  10974263 tccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatatttctgtagaacagttcaggggccatgtatccaatcgttcctc 10974362  T
Q  179 tagcagc 185  Q
    | |||||    
T  10974363 ttgcagc 10974369  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 9463970 - 9464078
Alignment:
Q  76 atttccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 175  Q
    ||||||||||| | |||||||| |||||| ||||| ||||| || || |||   ||||| || || |||||||| |||||||||||||| || || ||||    
T  9463970 atttccattaacaacattccaa-gctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttc 9464068  T
Q  176 ctctagcagc 185  Q
    |||| |||||    
T  9464069 ctcttgcagc 9464078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 9159534 - 9159751
Alignment:
Q  4 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 103  Q
    |||||||||||||||||||||| ||||||||||  ||| |||| ||  ||||||||||||| | |  |||| |||||||| || ||||||||||| ||||    
T  9159534 taaatccaatagggaaagaaaagttggcttgaacgatccgcatgtggatttaaatttcttcgcttacttgccatttccatcaaaagcattccaaaactat 9159633  T
Q  104 acacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaatgct 203  Q
    | ||||| || || || || |||  ||||||||||||||||||||| || || ||||| ||||||||||||||||| || || || | | ||||||| ||    
T  9159634 aaacatcagccttgtatgatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaatttacaatact 9159733  T
Q  204 attttcaataggataaag 221  Q
    ||| ||| ||||||||||    
T  9159734 attgtcattaggataaag 9159751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 15927364 - 15927147
Alignment:
Q  4 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 103  Q
    ||||||||| | || ||||||| ||||||||||  ||| |||| ||  ||||||||||||||| |  |||| |||||||| || ||||||||||||||||    
T  15927364 taaatccaaaaagggaagaaaagttggcttgaacgatccgcatgtggatttaaatttcttctcttacttgccatttccatcaaaagcattccaaagctat 15927265  T
Q  104 acacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctctagcagcggtcatagttacaatgct 203  Q
    | |||||||| ||||| ||||||   ||||||||||||||||| ||||| || |||||||| ||||| |||||||| || || || | ||| ||||| ||    
T  15927264 atacatcggccttatacgaaactcctccaatatttttgtagaataattcaggagccatgtatccaatcgttcctcttgctgcagttaaagtgacaatact 15927165  T
Q  204 attttcaataggataaag 221  Q
    | | ||| ||||||||||    
T  15927164 aatctcattaggataaag 15927147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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