View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0484_low_2 (Length: 397)

Name: NF0484_low_2
Description: NF0484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0484_low_2
NF0484_low_2
[»] chr2 (1 HSPs)
chr2 (30-383)||(31657704-31658047)
[»] chr8 (3 HSPs)
chr8 (318-379)||(4954991-4955052)
chr8 (294-375)||(33982220-33982301)
chr8 (299-371)||(13702341-13702413)
[»] chr7 (2 HSPs)
chr7 (297-354)||(20947812-20947869)
chr7 (291-375)||(32309127-32309213)
[»] chr6 (1 HSPs)
chr6 (291-375)||(4844173-4844259)
[»] chr4 (3 HSPs)
chr4 (293-371)||(15640426-15640504)
chr4 (293-371)||(56546432-56546510)
chr4 (298-371)||(27921930-27922005)
[»] chr3 (2 HSPs)
chr3 (293-371)||(36331709-36331787)
chr3 (291-371)||(26583135-26583218)
[»] chr5 (1 HSPs)
chr5 (293-371)||(6447463-6447541)
[»] chr1 (3 HSPs)
chr1 (291-375)||(13941349-13941435)
chr1 (294-331)||(26321749-26321786)
chr1 (293-377)||(4616901-4616985)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 383
Target Start/End: Original strand, 31657704 - 31658047
Alignment:
Q  30 aaaagataatctagtttgtatttgtttactaccataaaaaacacttcaaaattattttcggcnnnnnnntgcattttctcattatcatgtgtagaattag 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||       |    
T  31657704 aaaagataatctagtttgtatttgtttactaccataaaaaacacttcaaaattattttcggaaaaaaaatgcattttctcattatcatgtgt-------g 31657796  T
Q  130 gaattaatagttagactttgagaagttaagannnnnnnataagctcaaggtgattcaatgtctctaataatttttctgcaaatagattaaatgtcataca 229  Q
    |||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31657797 gaattaatagttagactttgagaagttaagattttattatatgctcaaggtgattcaatgtctctaataatttttctgcaaatagattaaatgtcataca 31657896  T
Q  230 aatttcagttgtgatataaaatatttgagtttcagttgatcattaaattctannnnnnnnnaagtagtctagtggttagaatttattttttaaagtgaat 329  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||          ||||| |||||||||||||||||| ||||||||||||||    
T  31657897 aatttcagttgtgatataaaatatttgagtttccgttgatcattaaattct---tttttttaagtaatctagtggttagaatttactttttaaagtgaat 31657993  T
Q  330 aattgagatgtctgaggttcgaaccacgaaccctgcacataacaatacatcgcc 383  Q
    || |||| ||||||  ||||||||||||||||||||| |||||||| |||||||    
T  31657994 aactgaggtgtctggagttcgaaccacgaaccctgcatataacaatgcatcgcc 31658047  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 4954991 - 4955052
Alignment:
Q  318 tttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataacaatacat 379  Q
    |||||||||||||| |  ||||||||||||||||||||||  ||||||| ||||||||||||    
T  4954991 tttaaagtgaataaataggatgtctgaggttcgaaccacggcccctgcatataacaatacat 4955052  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 33982301 - 33982220
Alignment:
Q  294 tagtctagtggttagaatttattttttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataacaat 375  Q
    ||||||| ||| ||||||| |  || |||||||||||| || | |||||| |||||||||| ||| ||||||| ||||||||    
T  33982301 tagtctattggctagaattcaccttataaagtgaataagtgcggtgtctggggttcgaaccccgacccctgcatataacaat 33982220  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 13702341 - 13702413
Alignment:
Q  299 tagtggttagaatttattttttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataa 371  Q
    |||||| ||||||| |  || ||| |||||||| |||| ||||||||||||||||| ||| ||||||| ||||    
T  13702341 tagtggctagaattcaccttataaggtgaataagtgaggtgtctgaggttcgaaccccgacccctgcatataa 13702413  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 20947869 - 20947812
Alignment:
Q  297 tctagtggttagaatttattttttaaagtgaataattgagatgtctgaggttcgaacc 354  Q
    |||||||| ||||||| | |||||||||||||||| |||||||||||| |||||||||    
T  20947869 tctagtggctagaattcactttttaaagtgaataagtgagatgtctgaagttcgaacc 20947812  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 32309127 - 32309213
Alignment:
Q  291 aagtagtctagtggttagaatt--tattttttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataacaat 375  Q
    |||||||||||||| |||||||   ||||||||| |||||||| || | |||||||| |||||||  ||| ||||||| ||||||||    
T  32309127 aagtagtctagtggctagaattcacattttttaaggtgaataactggggtgtctgagattcgaactccgacccctgcatataacaat 32309213  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 4844259 - 4844173
Alignment:
Q  291 aagtagtctagtggttagaatttatttttt--aaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataacaat 375  Q
    |||||||||||||||||||||| | |||||  || |||||||| |||| |||||||||||  |||| ||| ||||||| ||||||||    
T  4844259 aagtagtctagtggttagaattcacttttttcaaggtgaataagtgaggtgtctgaggtttaaaccccgacccctgcatataacaat 4844173  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 371
Target Start/End: Original strand, 15640426 - 15640504
Alignment:
Q  293 gtagtctagtggttagaatttattttttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataa 371  Q
    |||||||||||| ||||| ||   ||||||||||||||| || | ||||||||||||||||| ||||| ||||| ||||    
T  15640426 gtagtctagtggctagaaattcacttttaaagtgaataagtggggtgtctgaggttcgaaccccgaacactgcatataa 15640504  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 371
Target Start/End: Original strand, 56546432 - 56546510
Alignment:
Q  293 gtagtctagtggttagaatttattttttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataa 371  Q
    |||| ||||||| ||||||| | |||||||||||||||| || | |||||| |||||||||| ||  ||||||| ||||    
T  56546432 gtagcctagtggctagaattcactttttaaagtgaataagtggggtgtctgtggttcgaaccccggcccctgcatataa 56546510  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 27922005 - 27921930
Alignment:
Q  298 ctagtggttagaattta--ttttttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataa 371  Q
    ||||||||||||||| |  ||||||||  ||||||| ||||||||||| |||||||||| ||  ||||||| ||||    
T  27922005 ctagtggttagaattcacattttttaagatgaataagtgagatgtctggggttcgaaccccggcccctgcatataa 27921930  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 371
Target Start/End: Original strand, 36331709 - 36331787
Alignment:
Q  293 gtagtctagtggttagaatttattttttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataa 371  Q
    |||||||||||| ||||||| | |||||||||||||||| || | |||| | |||||||||| ||| ||||||| ||||    
T  36331709 gtagtctagtggctagaattcactttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatataa 36331787  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 26583218 - 26583135
Alignment:
Q  291 aagtagtctagtggttagaatt---tattttttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataa 371  Q
    ||||| ||||||||||||||||   ||||||||||  |||||||||||| |||| |  ||||||||| ||| ||||||| ||||    
T  26583218 aagtaatctagtggttagaattcactattttttaagatgaataattgaggtgtccgtagttcgaaccccgacccctgcatataa 26583135  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 371
Target Start/End: Original strand, 6447463 - 6447541
Alignment:
Q  293 gtagtctagtggttagaatttattttttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataa 371  Q
    ||||| |||||||||||| ||  |||||||||||||||| || | |||| |||||||||||| ||  ||||||| ||||    
T  6447463 gtagtgtagtggttagaaattcatttttaaagtgaataagtggggtgtccgaggttcgaaccccggcccctgcatataa 6447541  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 13941435 - 13941349
Alignment:
Q  291 aagtagtctagtggttagaattta-ttttttaaag-tgaataattgagatgtctgaggttcgaaccacgaaccctgcacataacaat 375  Q
    ||||||| |||||||||||||| | |||||| ||| ||||||| || | |||| || ||||||||| ||||||||||| ||||||||    
T  13941435 aagtagtttagtggttagaattcacttttttcaagatgaataagtggggtgtccgaagttcgaacctcgaaccctgcatataacaat 13941349  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 26321749 - 26321786
Alignment:
Q  294 tagtctagtggttagaatttattttttaaagtgaataa 331  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  26321749 tagtttagtggttaaaatttattttttaaagtgaataa 26321786  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 4616985 - 4616901
Alignment:
Q  293 gtagtctagtggttagaatttattttttaaagtgaataattgagatgtctgaggttcgaaccacgaaccctgcacataacaatac 377  Q
    |||||||||||| ||||||| | ||| ||| |||||||| || | |||||| |||||||||| ||| |||| || |||| |||||    
T  4616985 gtagtctagtggctagaattcactttataaggtgaataagtggggtgtctgtggttcgaaccgcgacccctacatataataatac 4616901  T

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