View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0484_low_20 (Length: 251)
Name: NF0484_low_20
Description: NF0484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0484_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27532462 - 27532223
Alignment:
| Q |
1 |
ctttgaaatggcccacaaactgaagtgaacgatatactcattttttgtcatccctccatttccaacctcaagcatatcaggatctgtcgagttagaatgt |
100 |
Q |
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| T |
27532462 |
ctttgaaatggcccacaaactgaagtgaacgatatactcattttttgtcatccctccatttccaacctcaagcatatcaggatctgtcgagttagaatgt |
27532363 |
T |
|
| Q |
101 |
ttaatgaataaatcgactcataaattgtatcatgaaatcaatatgcaaactcgatgtctttcacaaaaagttgttaaacaaatgaaattctaaccattcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27532362 |
ttaatgaataaatcgactcataaattgtatcatgaaatcaatatgcaaactcgatgtctttcacaaaaagttgttaaacaaatgaaattctaaccattcc |
27532263 |
T |
|
| Q |
201 |
aaccaccaggtcttgcaagctcagcataaacttcattcat |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
27532262 |
aaccaccaggtcttgcaagctcagcataaacttcattcat |
27532223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 27526808 - 27526571
Alignment:
| Q |
1 |
ctttgaaatggcccacaaactgaagtgaacgatatactcattttttgtcatccctccatttccaacctcaagcatatcaggatctgtcgagttagaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| | |
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| T |
27526808 |
ctttgaaatggcccacaaactgaagtgaacaatatattcattttttgtcatccctccatttccaacctcaagcatgtcaggatctgttgagttaaaatat |
27526709 |
T |
|
| Q |
101 |
ttaatgaataaatcgactcataaattgtatcatgaaatcaatatgcaaactcgatgtctttcacaaaaagttgttaaacaaatgaaattctaaccattcc |
200 |
Q |
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| T |
27526708 |
ttaatgaatatcttgagtcataaattatatcatgaaatcaagatgcaaactcaat-tctttcacaaaaaattgttaaacaaatgaagttctaaccattcc |
27526610 |
T |
|
| Q |
201 |
aaccaccaggtcttgcaagctcagcataaacttcattca |
239 |
Q |
| |
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| ||||||||||||||| |||| |||||||||||||||| |
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| T |
27526609 |
agccaccaggtcttgcatgctcggcataaacttcattca |
27526571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 32590219 - 32590259
Alignment:
| Q |
45 |
ttgtcatccctccatttccaacctcaagcatatcaggatct |
85 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
32590219 |
ttgtcatgcctccatttccaacttcaagcatatcaggatct |
32590259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 32600667 - 32600707
Alignment:
| Q |
45 |
ttgtcatccctccatttccaacctcaagcatatcaggatct |
85 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
32600667 |
ttgtcatgcctccatttccaacttcaagcatatcaggatct |
32600707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 24883727 - 24883685
Alignment:
| Q |
45 |
ttgtcatccctccatttccaacctcaagcatatcaggatctgt |
87 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||| |
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|
| T |
24883727 |
ttgtcatacctccatttccaacttcaagcatgtcaggatctgt |
24883685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 34577981 - 34578019
Alignment:
| Q |
47 |
gtcatccctccatttccaacctcaagcatatcaggatct |
85 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
34577981 |
gtcatgcctccatttccaacttcaagcatatcaggatct |
34578019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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