View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0484_low_4 (Length: 381)
Name: NF0484_low_4
Description: NF0484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0484_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 100 - 372
Target Start/End: Complemental strand, 6887153 - 6886874
Alignment:
| Q |
100 |
tgatagattaacataacttcttgtaccgataataaattaaatatatatcaaaatttattatatatgtgattaagactcgataaaggaaattaaaatctga |
199 |
Q |
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| T |
6887153 |
tgatagattaacatgacttcttgtaccgataataaattaaatatatatcaaaatttattatatatgtgattaagactcgataaaggaaattaaaatctga |
6887054 |
T |
|
| Q |
200 |
tccaatcaattattcataacataatatcctaaaaataataaaaattgattttttatttaaattttgtttgaattgaccatacaacaaagcttttcatcac |
299 |
Q |
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| T |
6887053 |
tccaatcaattattcataacataatatcctaaaaataataaaaattgattttttatttaaattttgtttgaattgaccatacaacaaagcttttcatcac |
6886954 |
T |
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| Q |
300 |
cttctatagaaag-------nnnnnnnnncattgtttcttataaccatcaccaattatttagcaattcattgagaataat |
372 |
Q |
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| T |
6886953 |
cttctatagaaagaaaaaaaaaaaaaaaacattgtttcttataaccatcaccaattatttagcaatccattgagaataat |
6886874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 23528862 - 23528923
Alignment:
| Q |
6 |
atatgtccctgtgtgtgtcccatgattggactccccctcatcttaacaattttgttttactt |
67 |
Q |
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| T |
23528862 |
atatgtccttgtgtgtgtcccatgattgaactccccctcatcttaacaattttgttttactt |
23528923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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