View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0484_low_7 (Length: 376)

Name: NF0484_low_7
Description: NF0484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0484_low_7
NF0484_low_7
[»] chr3 (7 HSPs)
chr3 (1-347)||(23149565-23149911)
chr3 (1-343)||(23140955-23141297)
chr3 (1-347)||(23024958-23025304)
chr3 (150-332)||(23018090-23018272)
chr3 (81-347)||(23033618-23033884)
chr3 (65-323)||(23039796-23040054)
chr3 (65-294)||(23146671-23146900)
[»] scaffold0554 (1 HSPs)
scaffold0554 (67-332)||(5500-5765)
[»] chr6 (1 HSPs)
chr6 (80-332)||(21780701-21780953)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 23149565 - 23149911
Alignment:
Q  1 tttatgagaacatctaccagatcttgatctgtttcagcttggtcataactgccttttgacttggcctctttgtgctcggtgatgatgttttccattatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23149565 tttatgagaacatctaccagatcttgatctgtttcagcttggtcataactgccttttgacttggcctctttgtgctcggtgatgatgttttccattatct 23149664  T
Q  101 gatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatattgcagccatgtaatagaaggaaagaaatctgctaagttaaaacctgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23149665 gatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatattgcagccatgtaatagaaggaaagaaatctgctaagttaaaacctgc 23149764  T
Q  201 tgccacctttactaactcttttactgctgatataaatttgtcttggtctttgaacttcttgccaaaggcagcttttgaaacaatggtgtatattatagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23149765 tgccacctttactaactcttttactgctgatataaatttgtcttggtctttgaacttcttgccaaaggcagcttttgaaacaatggtgtatattatagaa 23149864  T
Q  301 attacagcttgagtgaggttgatgggtgatccttccttcgaagcaat 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23149865 attacagcttgagtgaggttgatgggtgatccttccttcgaagcaat 23149911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 23140955 - 23141297
Alignment:
Q  1 tttatgagaacatctaccagatcttgatctgtttcagcttggtcataactgccttttgacttggcctctttgtgctcggtgatgatgttttccattatct 100  Q
    ||||||||||||||||| | ||||| ||||| |||| ||||||||||  || |||||||||||||||| ||||||||  |||||||||||||||||||||    
T  23140955 tttatgagaacatctactatatcttcatctgattcaccttggtcatagttggcttttgacttggcctccttgtgctcactgatgatgttttccattatct 23141054  T
Q  101 gatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatattgcagccatgtaatagaaggaaagaaatctgctaagttaaaacctgc 200  Q
    ||||||  ||| ||||| ||||||||||| || ||||||||||||||||||| |||||||| ||||| |||||||| || ||| |||||| |||||||||    
T  23141055 gatcaacctgtcgatgcaccctctcaagggtaggccttaaaccagtgaaataatgcagccaagtaatcgaaggaaacaagtcttctaagtcaaaacctgc 23141154  T
Q  201 tgccacctttactaactcttttactgctgatataaatttgtcttggtctttgaacttcttgccaaaggcagcttttgaaacaatggtgtatattatagaa 300  Q
    ||| | ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||| ||| |||||||||  ||||    
T  23141155 tgcaatctttattaactcttttactgctgatataaatttgtcttggtcgttgcacttcttgccaaatgcagattttgaaagaatagtgtatattgaagaa 23141254  T
Q  301 attacagcttgagtgaggttgatgggtgatccttccttcgaag 343  Q
    | ||||||||||||||||||||||| |||||||| ||| ||||    
T  23141255 agtacagcttgagtgaggttgatggatgatcctttctttgaag 23141297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 23024958 - 23025304
Alignment:
Q  1 tttatgagaacatctaccagatcttgatctgtttcagcttggtcataactgccttttgacttggcctctttgtgctcggtgatgatgttttccattatct 100  Q
    |||| ||||||||||||||||||||  |||| |||| |||||||| |    || |||||||||||||||||||||||  |||||||||||||||||||||    
T  23024958 tttaagagaacatctaccagatcttcgtctgattcaacttggtcaaattctccctttgacttggcctctttgtgctcattgatgatgttttccattatct 23025057  T
Q  101 gatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatattgcagccatgtaatagaaggaaagaaatctgctaagttaaaacctgc 200  Q
    |||| |       |||| |||| ||||| ||| ||||||||||||| ||| | |||| ||||||||| |||||||| || |||||||||| |||||||||    
T  23025058 gatccaccaccctatgcaccctttcaagcttaggccttaaaccagtaaaaaaatgcatccatgtaatggaaggaaataactctgctaagtcaaaacctgc 23025157  T
Q  201 tgccacctttactaactcttttactgctgatataaatttgtcttggtctttgaacttcttgccaaaggcagcttttgaaacaatggtgtatattatagaa 300  Q
    ||| | ||||| || ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| |||||||||  ||||    
T  23025158 tgcaatctttaatatctctttttctgctgatataaatttttcttggtctttgaatttcttgccaaaggcagattttgaaacaatagtgtatattgaagaa 23025257  T
Q  301 attacagcttgagtgaggttgatgggtgatccttccttcgaagcaat 347  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  23025258 agtacagcttgagtgaggttgatgggtgatccttccttcgaagcaat 23025304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 150 - 332
Target Start/End: Original strand, 23018090 - 23018272
Alignment:
Q  150 atattgcagccatgtaatagaaggaaagaaatctgctaagttaaaacctgctgccacctttactaactcttttactgctgatataaatttgtcttggtct 249  Q
    |||||| |||||| ||  |||||||||  ||||| | |||| |||||||||||| | ||||||  | ||||||||  ||||||||||||| |||||||||    
T  23018090 atattgaagccatttagaagaaggaaacgaatctcccaagtcaaaacctgctgcaatctttacagattcttttaccactgatataaatttttcttggtct 23018189  T
Q  250 ttgaacttcttgccaaaggcagcttttgaaacaatggtgtatattatagaaattacagcttgagtgaggttgatgggtgatcc 332  Q
    ||| | || ||||||||||||||  |||||||||| ||||||||   ||||| |||||||| ||||| |||||| || |||||    
T  23018190 ttgcatttattgccaaaggcagcccttgaaacaattgtgtatatcgaagaaagtacagcttcagtgaagttgattggcgatcc 23018272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 347
Target Start/End: Original strand, 23033618 - 23033884
Alignment:
Q  81 gatgatgttttccattatctgatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatattgcagccatgtaatagaaggaaagaaa 180  Q
    |||||||||||| |  |||| |||| ||||| ||||   | ||||||| ||| |||| | |||||| | || ||| |||||| ||  ||||||||| |||    
T  23033618 gatgatgttttcaaacatctcatcattttgtcgatgaaacttctcaagcttaggcctaataccagtaacatgttgaagccatttagaagaaggaaacaaa 23033717  T
Q  181 tctgctaagttaaaacctgctgccacctttactaactcttttactgctgatataaatttgtcttggtctttgaacttcttgccaaaggcagcttttgaaa 280  Q
    ||| | |||||||||||| |||| | ||||| |   | ||||||  | ||||||||||| ||||||||| || | |  ||||||||||| ||  ||||||    
T  23033718 tctcccaagttaaaacctcctgcaatctttagtgtttgttttaccaccgatataaatttttcttggtctctgcattcattgccaaaggcggcccttgaaa 23033817  T
Q  281 caatggtgtatattatagaaattacagcttgagtgaggttgatgggtgatccttccttcgaagcaat 347  Q
    |||| |||||||||  |||||||||||||| ||| ||||||| ||||||||| | || |||||||||    
T  23033818 caattgtgtatattgaagaaattacagcttcagtaaggttgaagggtgatccattctgcgaagcaat 23033884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 323
Target Start/End: Original strand, 23039796 - 23040054
Alignment:
Q  65 cctctttgtgctcggtgatgatgttttccattatctgatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatattgcagccatgt 164  Q
    ||||||| |||||  ||||||||||||| | |||||||||| ||||| ||||   ||||||||| ||| |||| | |||||| | |   || | |||| |    
T  23039796 cctctttatgctcattgatgatgttttctaatatctgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccattt 23039895  T
Q  165 aatagaaggaaagaaatctgctaagttaaaacctgctgccacctttactaactcttttactgctgatataaatttgtcttggtctttgaacttcttgcca 264  Q
    |   || ||||| |||||| | |||| ||||||  | || ||||||| | | | ||||||  |||||||||||||||||||||| ||| | |  ||||||    
T  23039896 agctgagggaaacaaatctcccaagtcaaaacccccggcaacctttattgattgttttaccactgatataaatttgtcttggtccttgcattcattgcca 23039995  T
Q  265 aaggcagcttttgaaacaatggtgtatattatagaaattacagcttgagtgaggttgat 323  Q
    ||||||||  |||||||||| |||||||||  ||||  |||||||| ||| | ||||||    
T  23039996 aaggcagcccttgaaacaattgtgtatattgaagaacgtacagcttcagtaatgttgat 23040054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 294
Target Start/End: Original strand, 23146671 - 23146900
Alignment:
Q  65 cctctttgtgctcggtgatgatgttttccattatctgatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatattgcagccatgt 164  Q
    ||||||| |||||  ||||||||||||| | |||||||||| ||||| ||||   ||||||||| ||| |||| | |||||| | |   || | |||| |    
T  23146671 cctctttatgctcattgatgatgttttcaaatatctgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccattt 23146770  T
Q  165 aatagaaggaaagaaatctgctaagttaaaacctgctgccacctttactaactcttttactgctgatataaatttgtcttggtctttgaacttcttgcca 264  Q
    |   || ||||| |||||| | |||| ||||||  |||| ||||||| | | | ||||||  ||||||||||||| |||||||||||| | |  ||||||    
T  23146771 agctgagggaaacaaatctcccaagtcaaaaccccctgcaacctttattgattgttttaccactgatataaatttatcttggtctttgcattcattgcca 23146870  T
Q  265 aaggcagcttttgaaacaatggtgtatatt 294  Q
    || |||||  | |||||||| |||||||||    
T  23146871 aaagcagccctcgaaacaattgtgtatatt 23146900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 332
Target Start/End: Complemental strand, 5765 - 5500
Alignment:
Q  67 tctttgtgctcggtgatgatgttttccattatctgatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatattgcagccatgtaa 166  Q
    ||||| |||||  ||||||||||||| | ||| |||||| ||||| ||||   | ||||||| ||| |||| |||||||| |  | ||| |||||| ||     
T  5765 tctttatgctcattgatgatgttttcaagtatttgatcagtttgtcgatgaagcatctcaagcttaggcctcaaaccagtaacttgttgtagccatttag 5666  T
Q  167 tagaaggaaagaaatctgctaagttaaaacctgctgccacctttactaactcttttactgctgatataaatttgtcttggtctttgaacttcttgccaaa 266  Q
     ||| ||||| |||||| | |||| ||||||| |||| | | ||| |   | ||||||  ||||||||||||| |||||||||||| | || ||||||||    
T  5665 cagatggaaacaaatctcccaagtcaaaacctcctgcaatccttattgtttgttttaccactgatataaatttttcttggtctttgcatttattgccaaa 5566  T
Q  267 ggcagcttttgaaacaatggtgtatattatagaaattacagcttgagtgaggttgatgggtgatcc 332  Q
    ||| ||  | |||||||| |||||||||  |||||||| |||||  ||||| ||||| ||||||||    
T  5565 ggctgccctcgaaacaattgtgtatattgaagaaattaaagcttttgtgagattgattggtgatcc 5500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 332
Target Start/End: Original strand, 21780701 - 21780953
Alignment:
Q  80 tgatgatgttttccattatctgatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatattgcagccatgtaatagaaggaaagaa 179  Q
    ||||||||||||| | |||||||||| ||||| | ||    |||||||| ||| |||| || ||||| | || ||  | |||| || |||||||||| ||    
T  21780701 tgatgatgttttcaaatatctgatcagtttgtcgttgaaaactctcaagcttaggcctcaatccagtaacatgttcaatccatttagtagaaggaaacaa 21780800  T
Q  180 atctgctaagttaaaacctgctgccacctttactaactcttttactgctgatataaatttgtcttggtctttgaacttcttgccaaaggcagcttttgaa 279  Q
    |||| | || |||||||||||||  || ||||   | | |||||   ||||||||||||| |||||||||||| | || || |||||||| |   | |||    
T  21780801 atctcccaaattaaaacctgctgaaacttttatcgattgttttataactgatataaatttttcttggtctttgcatttatttccaaaggcggacctcgaa 21780900  T
Q  280 acaatggtgtatattatagaaattacagcttgagtgaggttgatgggtgatcc 332  Q
    ||||| ||||||| |  |||| |||||||||||||||||||||| || |||||    
T  21780901 acaatagtgtatactgaagaagttacagcttgagtgaggttgattggcgatcc 21780953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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