View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0484_low_8 (Length: 317)
Name: NF0484_low_8
Description: NF0484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0484_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 268
Target Start/End: Complemental strand, 3708475 - 3708211
Alignment:
| Q |
4 |
gcaaggttgtggtgagtccatcgagataaaggcatcctcttctaccggctcttcttgcaaataacttgtgacaccagtacatgaagaatattgtcaccat |
103 |
Q |
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| T |
3708475 |
gcaaggttgtggtgagtccatcgagataaaggcatcctcttcaaccggctcttcttgcaaataacttgtgacaccagtacacgaagaattttgtcaccat |
3708376 |
T |
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| Q |
104 |
tgtacttcgaaaggctattgaaaatcacccttcaaatgttgagattcagttccatccccactgcatcgctagcaactagaacgtcgtatttgttactttg |
203 |
Q |
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| T |
3708375 |
tgtacttcgaaaggctattgaaaatcacccttcaaatgttgagattcagttccatccccactgcatcactagcaactag-atgtcgtatttgttactttg |
3708277 |
T |
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| Q |
204 |
attgtttgaacaaattagc-tgctgcctaaaagtttctgttgccaatgctccgtgtatgacataac |
268 |
Q |
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| T |
3708276 |
attgtttgaacaaatcagcttgctgcctaaaagtttctgttggcaatgctccgtgtatgacataac |
3708211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 3702360 - 3702295
Alignment:
| Q |
87 |
aagaatattgtcaccattgtacttcgaaaggctattgaaaatcacccttcaaatgttgagattcag |
152 |
Q |
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| T |
3702360 |
aagaattttgccaccattgtacttcgaaaggctactgaaaatcaccctttgaatgttgaggttcag |
3702295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 3702419 - 3702375
Alignment:
| Q |
19 |
gtccatcgagataaaggcatcctcttctaccggctcttcttgcaa |
63 |
Q |
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| T |
3702419 |
gtccatcgggataaaggcatcctcttctaccagctcttcctgcaa |
3702375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 86 - 256
Target Start/End: Original strand, 3520334 - 3520504
Alignment:
| Q |
86 |
gaagaatattgtcaccattgtacttcgaaaggctattgaaaatcacccttcaaatgttgagattcagttccatccccactgcatcgctagcaactagaac |
185 |
Q |
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||||||| |||||||| |||||||| |||||| |||| ||||||||||||| |||||| || || || |||||||||||||||| ||||| |||||||| |
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| T |
3520334 |
gaagaattttgtcaccgttgtactttgaaaggttattaaaaatcacccttcgaatgttaaggttaaggcccatccccactgcatcactagctactagaac |
3520433 |
T |
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| Q |
186 |
gtcgtatttgttactttgattgtttgaacaaattagc-tgctgcctaaaagtttctgttgccaatgctccgt |
256 |
Q |
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| T |
3520434 |
gtcatattcattactttgatcg-ttgaacaaattagcttgctgcctacgagtctctggtggcaaagctccgt |
3520504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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