View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0485-Insertion-2 (Length: 406)
Name: NF0485-Insertion-2
Description: NF0485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0485-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 405
Target Start/End: Original strand, 6629935 - 6630334
Alignment:
| Q |
6 |
caaaaccccaagcgcaagcaagtgtatacaatcaacaaccacctcatccattcccaaaacacacatttttcactaaatcacaaccctcatgggctaagag |
105 |
Q |
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| T |
6629935 |
caaaaccccaagc-caagcaagtgtatacaatcaacaaccacctcatccattcccacaacacacatttttcactaaatcacaaccctcatgcgttaagag |
6630033 |
T |
|
| Q |
106 |
tttgtcaatcagcgttggcctatcttcattaaatgacgcctcaatattcatctccatgttgaaaatcctctccatctcaactctattggtgtcaatttta |
205 |
Q |
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| T |
6630034 |
tttgttaatcagcgttggcctatcttcattaaatgacgcctcaatattcatctccatgttgaaaatcctctccatctcaactctattggtgtcaatttta |
6630133 |
T |
|
| Q |
206 |
gaattaggatatttacccaaaacaccat-aaaaaatgcaaacctctaacccccaaaatattctcttagtacctctcttttaaaacggatcaagagagtnn |
304 |
Q |
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| T |
6630134 |
gaattaggatatttacccaaaacaccataaaaaaatgcaaacctctaacccccaaaatattctcttaatacctctcttttaaaacggatcgagagagtaa |
6630233 |
T |
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| Q |
305 |
nnnnntgaagaaatttgtttaaaatcaattgtcaacattttatattaatgaatagatttctttcaaatgaagaaattaccctttgatgaattgagaataa |
404 |
Q |
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| T |
6630234 |
aaaaatgaagaaatttgtttaaaatcaatcgtcaacattttatattaatgaatagatttcctttaaatgaagaaattaccctttgatgaattgagagtaa |
6630333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 6803499 - 6803886
Alignment:
| Q |
10 |
accccaagcgcaagcaagtgtatacaatcaacaaccacctcatccattcccaaaacacacatttttcactaaatcacaaccctcatgggctaagagtttg |
109 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6803499 |
accccaagc-caagcaagtgtatacaatcaacaaccacctcatccatttcgacaacgcacatttttcactaaatcacaaccctcatgcgctaagagtttg |
6803597 |
T |
|
| Q |
110 |
tcaatcagcgttggcctatcttcattaaatgacgcctcaatattcatctccatgttgaaaatcctctccatctcaactctattggtgtcaattttagaat |
209 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6803598 |
tcaatcagcgttggcctatcttcattaaatgacacctcaatattcattcccatgttgaaaatcctctccatctcaactctattggtgtcaattttagaat |
6803697 |
T |
|
| Q |
210 |
taggatatttacccaaaacaccat-aaaaaatgcaaacctctaacccccaaaatattctcttagtacctctcttttaaaacggatcaagagagtnnnnnn |
308 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
6803698 |
taggatatttacccaaaacaccataaaaaaatgcaaacctctaacccccaaaatattctcttaatacctctcttttaaaacggatcgagagagtaaaaaa |
6803797 |
T |
|
| Q |
309 |
ntgaagaaatttgtttaaaatcaattgtcaacattttatattaatgaatagatttctttcaaatgaagaaattaccctttgatgaattg |
397 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6803798 |
atgaagaaatttgtttaaaatcaatcgccaacattttatattaatgaatagatttccatcaaatgaagaaattaccctttgatgaattg |
6803886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 6809621 - 6809705
Alignment:
| Q |
207 |
aattaggatatttacccaaaacaccataaaa--aatgcaaacctctaacccccaaaatattctcttagtacctctcttttaaaac |
289 |
Q |
| |
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|||||||| ||| ||| |||||||||||||| |||||||| |||||||||||||||| | |||||| || ||||||||||||| |
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| T |
6809621 |
aattaggacattgaccgaaaacaccataaaaaaaatgcaaagctctaacccccaaaatttcctcttaacacgtctcttttaaaac |
6809705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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