View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0485-Insertion-3 (Length: 373)
Name: NF0485-Insertion-3
Description: NF0485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0485-Insertion-3 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 99 - 373
Target Start/End: Original strand, 4191643 - 4191918
Alignment:
| Q |
99 |
taaaaatgtgttttttgattataaatgtgactaaagaagtaagtaccaacccgataaagcctc-atattttccacgtgagcttttgtttcctttcaatca |
197 |
Q |
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||||||||||||| || |||||||||||||| | | ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
4191643 |
taaaaatgtgtttcttaattataaatgtgaccagatgagtaagtaccaacacgataaagcccccatattttccacgtgagcttttgtttcctttcaatca |
4191742 |
T |
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| Q |
198 |
gagtttatttattacgattaggataaggtttcttctaatcattcaaagctattaaattttaatcaaacaacacttcctttatctcgtatggctttcaaca |
297 |
Q |
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|||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4191743 |
gagtttatctattacgattacgataagctttcttctaatcattcaaagctaagaaattttaatcaaacaacacttcctttatctcgtatggctttcaata |
4191842 |
T |
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| Q |
298 |
acaacaatatcaaaactcataaacacatcaatgttgttcctccaatcatcaacacaaaccacaacattccctctca |
373 |
Q |
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| T |
4191843 |
acaacaatatcaaaactcatgaacacatcaatgttgttcctccaatcatcaacacaaacgacaacattccctctca |
4191918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 4191674 - 4191768
Alignment:
| Q |
8 |
cagaggagtaagtaccaacacgataaagcctc-atattttccacgtgagcttttgtttcctttcaatcagagtttatttattacgattaggataa |
101 |
Q |
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|||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
4191674 |
cagatgagtaagtaccaacacgataaagcccccatattttccacgtgagcttttgtttcctttcaatcagagtttatctattacgattacgataa |
4191768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 4191425 - 4191510
Alignment:
| Q |
226 |
tttcttctaatcattcaaagctattaaattttaatcaaacaacacttcctttatctcgtatggctttcaacaacaacaatatcaaaa |
312 |
Q |
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| T |
4191425 |
tttcttctaatcattcaaagcttagaaatttaattcaaacaacacttc-tttatctcatatggctttcaacaacaaaaatatcaaaa |
4191510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 4190929 - 4190973
Alignment:
| Q |
31 |
taaagcctcatattttccacgtgagcttttgtttcctttcaatca |
75 |
Q |
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| T |
4190929 |
taaagcctcatattttccacgtgagcttttgttcccttgcaatca |
4190973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 4190929 - 4190973
Alignment:
| Q |
153 |
taaagcctcatattttccacgtgagcttttgtttcctttcaatca |
197 |
Q |
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| T |
4190929 |
taaagcctcatattttccacgtgagcttttgttcccttgcaatca |
4190973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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