View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0485_high_1 (Length: 263)
Name: NF0485_high_1
Description: NF0485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0485_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 38180539 - 38180711
Alignment:
| Q |
1 |
cgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180539 |
cgtggccgtcagagaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgc |
38180638 |
T |
|
| Q |
101 |
gcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
173 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180639 |
gcccaaagaaatgagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
38180711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 38185216 - 38185380
Alignment:
| Q |
9 |
tcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaag |
108 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
38185216 |
tcagagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaag |
38185315 |
T |
|
| Q |
109 |
aaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
173 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185316 |
aaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
38185380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 38170729 - 38170897
Alignment:
| Q |
5 |
gccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgccc |
104 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
38170729 |
gccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtataagtggatagtggtagcaaaagtgacttttgcgccc |
38170828 |
T |
|
| Q |
105 |
aaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
173 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
38170829 |
aaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatg |
38170897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1769 times since January 2019
Visitors: 3462