View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_high_18 (Length: 356)
Name: NF0486_high_18
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 208 - 350
Target Start/End: Complemental strand, 30970364 - 30970222
Alignment:
| Q |
208 |
aaaacctccactgctatttatgttgagctttgaggtctcttgaatatggtcttaaaaccttttgtgatcagggtattatttcccttcttgtggaatgtga |
307 |
Q |
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| T |
30970364 |
aaaacctccaccgctatttatgttgagctttgaggtctctttaatatggtcttaaaaccttttgggatcagggtattatttcccttcttgtggaatgtga |
30970265 |
T |
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| Q |
308 |
ttcttgggtctttatacaaattgttcagctcacttcatctcac |
350 |
Q |
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| T |
30970264 |
ttcttgggtctttatacaaattgttcaactcacttcatctcac |
30970222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 30970750 - 30970598
Alignment:
| Q |
28 |
caaaaaatacttattaaatannnnnnnnaaattcagaaaatgagatctcagtcgannnnnnngagaaaacaatctcacaacnnnnnnnngttgagnnnnn |
127 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
30970750 |
caaaaaatacttattaaatatttttttaaaattcagaaaatgagatctcagtcgatttttttgagaaaacaatctcacaactttttcttgttgagaaaaa |
30970651 |
T |
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| Q |
128 |
nnnn-tatctatcaatttaaattgagaaaacaaatatcacaaatttaaaaatc |
179 |
Q |
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| T |
30970650 |
aaatatatctatcaatttaaattgagaaaacaaatatcacaaatttaaaaatc |
30970598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 30970593 - 30970536
Alignment:
| Q |
168 |
aatttaaaaatcccataataagaattttgtgttgtaat-ttaaaacctccactgctat |
224 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |
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| T |
30970593 |
aatttaaaaatcccataataagaatcttgtgttgtaatattaaaacctccactcctat |
30970536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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