View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0486_high_23 (Length: 303)
Name: NF0486_high_23
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_high_23 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 8152431 - 8152685
Alignment:
| Q |
1 |
tgtgtcatgttcttctcccttcaatctctctccccatgcatgtcaaaattata--caagtttgtttaatgtaatttgttnnnnnnntaatcaaatatcag |
98 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
8152431 |
tgtgtcatgttcttctcccttcaatctctctccccatgcatgtcaaaattatatacaagtttgtttaatgtaatttgttaaaaaaataatcaaatatcag |
8152530 |
T |
|
| Q |
99 |
tgaccgctatttgtcatacggctatcccggtatccaagattgactacaaagatgaaaattgaagaggttcagtcgacaacaaagaaacagcgtgttgcta |
198 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8152531 |
tgaccgctatttgtcatacggctatcccgctatccaagattgactacaaagatgaaaattgaagaggttcagtcgacaacaaagaaacagcgtgttgcta |
8152630 |
T |
|
| Q |
199 |
ctcacactcacattaaaggcctaggtcttgaggttcgttctctgctcctcctcaa |
253 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
8152631 |
ctcacactcacattaaaggcctaggtcttgaggttcgttctcttctcttcctcaa |
8152685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 47957227 - 47957133
Alignment:
| Q |
147 |
aagatgaaaattgaagaggttcagtcgacaacaaagaaacagcgtgttgctactcacactcacattaaaggcctaggtcttgaggttcgttctct |
241 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47957227 |
aagatgaaaattgaagaggttcagtcgacaacaaagaaacagcgtgttgctactcacactcacattaaaggcctaggtcttgaggtttgttctct |
47957133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 41654265 - 41654297
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatac |
117 |
Q |
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|||||||||||||||||| |||||||||||||| |
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|
| T |
41654265 |
taatcaaatatcagtgactgctatttgtcatac |
41654297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 19835436 - 19835474
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatacggctat |
123 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
19835436 |
taatcaaatatcagtgaccgctatttgtcatacagctat |
19835474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 36497137 - 36497175
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatacggctat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
36497137 |
taatcaaatatcagtgaccgctatttgtcataccgctat |
36497175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 50741462 - 50741500
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatacggctat |
123 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
50741462 |
taatcaaatatcggtgaccgctatttgtcataccgctat |
50741500 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 36551449 - 36551481
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatac |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
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|
| T |
36551449 |
taatcaaatatcggtgaccgctatttgtcatac |
36551481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 16640 - 16608
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
16640 |
taatcaaatatcagtgaccgctatttgtcatac |
16608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 25029700 - 25029738
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatacggctat |
123 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |
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| T |
25029700 |
taatcaaatatccgtgaccgctatttgtcatactgctat |
25029738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 27707942 - 27707909
Alignment:
| Q |
90 |
aaatatcagtgaccgctatttgtcatacggctat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
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|
| T |
27707942 |
aaatatcagtgaccgctatttgtcataccgctat |
27707909 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 22576048 - 22576016
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatac |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
22576048 |
taatcaaatatcggtgaccgctatttgtcatac |
22576016 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 54857124 - 54857162
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatacggctat |
123 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
54857124 |
taatcaaatatctgtgaccgctatttgtcataccgctat |
54857162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 51850462 - 51850430
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatac |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
51850462 |
taatcaaatatcggtgaccgctatttgtcatac |
51850430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 35819408 - 35819449
Alignment:
| Q |
85 |
taatcaaatatcagtgaccgctatttgtcatacggctatccc |
126 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| |||||||| |
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|
| T |
35819408 |
taatcaaatatcggtgaccgctatttgtaataccgctatccc |
35819449 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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