View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_high_3 (Length: 685)
Name: NF0486_high_3
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 38 - 373
Target Start/End: Complemental strand, 6179560 - 6179225
Alignment:
| Q |
38 |
aatgtgttcgtatatataagtggcaagaaaatgagattgagatagaggttctaggnnnnnnnnggtagtatattttagggttatcaatattgtggggcta |
137 |
Q |
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| T |
6179560 |
aatgtgttcgtatatataagtggcaagaaaatgagattgagatagaggttctaggtttattttggtagtagattttagggttacaaatattgtggggcta |
6179461 |
T |
|
| Q |
138 |
gttgcatatggtattattgaaggtgagtagtatctataggacaaacaattcaagttgggaccatgaagggttgttaataattgacgtagagtttgttgaa |
237 |
Q |
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| T |
6179460 |
gttgcatatggtattattgaaggtgactagtatctataggacaaacaattcaagttgggaccatgaaggattgttaataattgacgtagagtttgttgaa |
6179361 |
T |
|
| Q |
238 |
caaaggtgcaagtaacaattattgtgtgaagaatttatgatcacaaccatgtggtgaaaatggtcaaacactcactcatttagtaaaaaggacagacata |
337 |
Q |
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| T |
6179360 |
caaaggtgcaagtcacaattattgtgtgaagaatttatgatcacaaccatgtggtgaaaatggtcaaacactcactcatatagtaaaaaggacagacata |
6179261 |
T |
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| Q |
338 |
ataggactaatgtttgtttctgttcagtttttaatt |
373 |
Q |
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| T |
6179260 |
ataggactaatgtttgtttctgttcagtttttaatt |
6179225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 453 - 664
Target Start/End: Complemental strand, 6179145 - 6178935
Alignment:
| Q |
453 |
catatcttgaactgaaccaaatttaagtgtgaagtttaaatctgtactttgttttaaaataaaatagtttatttgtactttgnnnnnnnnnnnnn-gtaa |
551 |
Q |
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| T |
6179145 |
catatcttgagttgaaccaaatttaggtgtgaagtttaaatttgtactttgttt-aaaataaaatagtt-atttgtactttgttttttttctttttgtaa |
6179048 |
T |
|
| Q |
552 |
atttcaattatgtttactagttataattataattcatttctctgtgccataattttgaaattgaccaaatttaagtgttaggcttaggcaacaacccata |
651 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6179047 |
atttgaattatgtttactagttgtaattataattcatttcgctctgtcataattttgaaattgaccaaatttaagtgttaggcttaagcaacaacccata |
6178948 |
T |
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| Q |
652 |
atcctactgtttt |
664 |
Q |
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| T |
6178947 |
cttctactgtttt |
6178935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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