View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_high_34 (Length: 251)
Name: NF0486_high_34
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 10266107 - 10266315
Alignment:
| Q |
10 |
gctcctttaggactcctgcacgagctgacaccatgtttttctaagaggacagaactgaaaaacccttcactttcttggccgattatcccaggaagagaat |
109 |
Q |
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| T |
10266107 |
gctcctttagaactcctgcacgagctgacaccatgtttttctaagaggacagaactgaaaaacccttcactttcttggccgattatcccaggaagagaat |
10266206 |
T |
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| Q |
110 |
aatttactcattaacataacaaagaatgtgattaatcagagaaatatattgatgacatttaaggatcataatgtatatagtctaactaccatcaagtata |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10266207 |
aatttactcattaacataacaaagaatgtgattaatcagagaaatatattgatgacatttaaggatcataatgtatatagtctaactaccatcaagtata |
10266306 |
T |
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| Q |
210 |
tttataatt |
218 |
Q |
| |
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||||||||| |
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| T |
10266307 |
tttataatt |
10266315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 10285132 - 10285340
Alignment:
| Q |
10 |
gctcctttaggactcctgcacgagctgacaccatgtttttctaagaggacagaactgaaaaacccttcactttcttggccgattatcccaggaagagaat |
109 |
Q |
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| T |
10285132 |
gctcctttagaactcctgcacgagctgacaccatgtttttctaagaggacagaactgaaaaacccttcactttcttggccgattatcccaggaagagaat |
10285231 |
T |
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| Q |
110 |
aatttactcattaacataacaaagaatgtgattaatcagagaaatatattgatgacatttaaggatcataatgtatatagtctaactaccatcaagtata |
209 |
Q |
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| T |
10285232 |
aatttactcattaacataacaaagaatgtgattaatcagagaaatatattgatgacatttaaggatcataatgtatatagtctaactaccatcaagtata |
10285331 |
T |
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| Q |
210 |
tttataatt |
218 |
Q |
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||||||||| |
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| T |
10285332 |
tttataatt |
10285340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 10266327 - 10266367
Alignment:
| Q |
202 |
caagtatatttataattcatatcaagcatctatgttcatct |
242 |
Q |
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| T |
10266327 |
caagtatatttataattcatatcaagcatatatgttcatct |
10266367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 10285352 - 10285392
Alignment:
| Q |
202 |
caagtatatttataattcatatcaagcatctatgttcatct |
242 |
Q |
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| T |
10285352 |
caagtatatttataattcatatcaagcatatatgttcatct |
10285392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 8106660 - 8106786
Alignment:
| Q |
79 |
ctttcttggccgattatcccaggaagagaataatttactcattaacataacaaagaatgtgattaatcagagaaatatattgatgacatttaaggatcat |
178 |
Q |
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||||||||| |||||||| || |||||||| ||||||||| | |||| ||||||||| || |||| | |||||||||||||||||| ||| ||||||| |
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| T |
8106660 |
ctttcttggacgattatctcatgaagagaaaaatttactcggtgacatgacaaagaatatggttaaaccaagaaatatattgatgacacttagggatcat |
8106759 |
T |
|
| Q |
179 |
aatgtatatagtctaactaccatcaag |
205 |
Q |
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|||| | | ||| |||| ||||||||| |
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| T |
8106760 |
aatgcagagagtttaacaaccatcaag |
8106786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 7150681 - 7150783
Alignment:
| Q |
80 |
tttcttggccgattatcccaggaagagaataatttactcattaacataacaaagaatgtgattaatcagagaaatatattgatgacatttaaggatcata |
179 |
Q |
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|||||||| |||||||| || ||||| ||| ||||||| | |||| ||||||| | |||||| | ||||||||||||||||||||||| |||||||| |
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| T |
7150681 |
tttcttggtcgattatctcatgaagaaaattttttactcggtgacatgacaaagagtaggattaaaccgagaaatatattgatgacatttagggatcata |
7150780 |
T |
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| Q |
180 |
atg |
182 |
Q |
| |
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||| |
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| T |
7150781 |
atg |
7150783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 44662358 - 44662260
Alignment:
| Q |
84 |
ttggccgattatcccaggaagagaataatttactcattaacataacaaagaatgtgattaatcagagaaatatattgatgacatttaaggatcataatg |
182 |
Q |
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|||| |||||||| || ||||||| |||||||||| | |||||||||||||| || ||| | ||||||||||| || ||||||| || |||||||| |
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| T |
44662358 |
ttggtcgattatctcatcaagagaaaaatttactcagtgacataacaaagaatatggctaaacctagaaatatattaatcacatttaggggtcataatg |
44662260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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