View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0486_high_36 (Length: 248)

Name: NF0486_high_36
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0486_high_36
NF0486_high_36
[»] chr4 (6 HSPs)
chr4 (33-236)||(54823438-54823644)
chr4 (127-229)||(30859229-30859331)
chr4 (127-236)||(55227478-55227587)
chr4 (127-236)||(30191112-30191221)
chr4 (144-216)||(19069025-19069097)
chr4 (133-229)||(18878046-18878142)
[»] chr8 (5 HSPs)
chr8 (94-236)||(19299186-19299328)
chr8 (145-236)||(1186429-1186520)
chr8 (127-236)||(15990575-15990684)
chr8 (127-236)||(37590202-37590311)
chr8 (127-236)||(14505587-14505696)
[»] chr2 (1 HSPs)
chr2 (127-236)||(16206405-16206514)
[»] chr7 (10 HSPs)
chr7 (127-234)||(3896331-3896438)
chr7 (127-236)||(32480081-32480190)
chr7 (127-226)||(3205306-3205405)
chr7 (127-224)||(11342959-11343056)
chr7 (127-236)||(26016394-26016503)
chr7 (127-164)||(33611270-33611307)
chr7 (133-225)||(4646128-4646220)
chr7 (144-226)||(17238848-17238930)
chr7 (147-236)||(41601319-41601408)
chr7 (127-160)||(48769979-48770012)
[»] chr1 (4 HSPs)
chr1 (127-229)||(30033448-30033550)
chr1 (127-181)||(49372190-49372244)
chr1 (147-236)||(21701638-21701727)
chr1 (133-197)||(40490218-40490282)
[»] chr5 (4 HSPs)
chr5 (127-236)||(22292245-22292354)
chr5 (127-238)||(18759582-18759693)
chr5 (127-230)||(28246123-28246226)
chr5 (159-226)||(21092105-21092172)
[»] chr3 (7 HSPs)
chr3 (127-229)||(6006207-6006309)
chr3 (127-236)||(31228104-31228213)
chr3 (127-236)||(17790018-17790127)
chr3 (127-236)||(19098460-19098569)
chr3 (144-229)||(53437419-53437504)
chr3 (127-225)||(19603095-19603193)
chr3 (144-229)||(53394718-53394803)
[»] chr6 (2 HSPs)
chr6 (147-226)||(16890097-16890176)
chr6 (147-226)||(9959113-9959192)
[»] scaffold0011 (1 HSPs)
scaffold0011 (144-226)||(191179-191261)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 54823438 - 54823644
Alignment:
Q  33 aagggaaaaatgcggatgtataatatatataatttgattcataacttattcnnnnnnnnnt---ttgattcataacatgatacaataggtaagatggtgc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||| ||||||||||    
T  54823438 aagggaaaaatgcggatgtataatatatataatttgattcataacttattaaaaaaaaaaaaaattgattcataacatgatacaataggcaagatggtgc 54823537  T
Q  130 aatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttcctc 229  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  |||||||||||||| | ||||||||||||||    
T  54823538 aatttgacaacgtcgattttgaaacagactctaagttgatagctgatgctttcctttctactaggaatgacttgtccaaatttagctgtattatttcctc 54823637  T
Q  230 cagtcgt 236  Q
    | |||||    
T  54823638 ctgtcgt 54823644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 30859229 - 30859331
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    ||||||||||||| || ||||| |||||||| ||||||||||||||||| || |||||||||||||| ||| |||||||| ||||||| || ||||||||    
T  30859229 tgcaatttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttc 30859328  T
Q  227 ctc 229  Q
    |||    
T  30859329 ctc 30859331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 55227478 - 55227587
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || ||||| |||||||| ||||||||||||||||| || |||||||||||||| ||| |||||||| ||||||| || ||||||||    
T  55227478 tgcagtttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttc 55227577  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  55227578 ctcctgtcgt 55227587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 30191221 - 30191112
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||| || ||||||||||| | |||| |||||||| ||||||| || |||||||     
T  30191221 tgcagtttgacaatgtggattttgaaacagactctaagttgacagctgacgccttcctttctaccatgaacgacttgtccgaatttggctgcattatttt 30191122  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  30191121 ctcctgtcgt 30191112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 19069025 - 19069097
Alignment:
Q  144 gattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggtt 216  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||  |||||| |||||||| |||||||||    
T  19069025 gattttgaaacagactcgaagttgacagctgatgctttcctctctagcaggaacgacttgtccgaatttggtt 19069097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 18878046 - 18878142
Alignment:
Q  133 ttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttcctc 229  Q
    |||| |||||||| |||| |||||| ||||| || || | |||||| ||||||| |||||||||| |||||||  ||||| |||| |||||||||||    
T  18878046 ttgataacgtcgactttggaacagactctaaattaacggttgatgccttcctttttactaggaacgacttgtctgaattttgttgcattatttcctc 18878142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 19299328 - 19299186
Alignment:
Q  94 ttgattcataacatgatacaataggtaagatggtgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactag 193  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  19299328 ttgattcataacatgatacaataggcaagatggtgcaatttgacaacgtcgattttgaaacagactctaagttgatagctgatgctttcctttctactag 19299229  T
Q  194 gaacaacttgtccaaatttggttgtattatttcctccagtcgt 236  Q
    |||  |||||||||||||| | ||||||||||||||| |||||    
T  19299228 gaatgacttgtccaaatttagctgtattatttcctcctgtcgt 19299186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 1186429 - 1186520
Alignment:
Q  145 attttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttcctccagtcgt 236  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||| |||||| |||||||| |||||||||| |||||||||||| |||||    
T  1186429 attttgaaacagactctaagttgacagctgacgccttcctttctaccaggaacgacttgtccgaatttggttgcattatttcctcctgtcgt 1186520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 15990684 - 15990575
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| ||||||||  | |||||||||||||| ||||||||||||||||| || |||||||||||||| ||| |||||||| ||||||| || ||||||||    
T  15990684 tgcagtttgacaatttggattttgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttc 15990585  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  15990584 ctcctgtcgt 15990575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 37590311 - 37590202
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    ||||||||||||| || ||||| |||||||| | |||||| || ||||| || |||||||||||||| ||| |||||||||||||||| || ||| ||||    
T  37590311 tgcaatttgacaatgtggatttcgaaacagactttaagttaacggctgaagccttcctttctactagaaacgacttgtccaaatttggatgcattgtttc 37590212  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  37590211 ctcccgtcgt 37590202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 14505587 - 14505696
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || ||||| |||||||| ||||||||||||||||| || |||||||||||||| ||| |||| |   ||||||| || ||||||||    
T  14505587 tgcagtttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttataagaatttggatgcattatttc 14505686  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  14505687 ctcctgtcgt 14505696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 16206405 - 16206514
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||| ||| |||||||| ||||||| || ||||||||    
T  16206405 tgcagtttgacaatgtggattttgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttc 16206504  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  16206505 ctcctgtcgt 16206514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 3896331 - 3896438
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||  |||||| |||||||| ||||||||||||||||||     
T  3896331 tgcagtttgacaatgtagattttgaaacagactcgaagttgacagctgatgcattcctttctagcaggaacgacttgtccgaatttggttgtattattta 3896430  T
Q  227 ctccagtc 234  Q
     |||||||    
T  3896431 atccagtc 3896438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 32480081 - 32480190
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || ||||| |||||||| ||||||||||||||||| || ||||||||| | || ||| |||||||||||||||| || ||||||||    
T  32480081 tgcagtttgacaatgtagatttcgaaacagactctaagttgacagctgaagccttcctttctgccagaaacgacttgtccaaatttggatgcattatttc 32480180  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  32480181 ctcctgtcgt 32480190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 3205405 - 3205306
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| ||||| || || |||||||||||||| || ||||||||||||||||||||||| ||||  |||||| |||||||| |||||| |||||| |||||    
T  3205405 tgcagtttgataatgtggattttgaaacagactcaaagttgacagctgatgctttcctctctagcaggaacgacttgtccgaatttgtttgtatcatttc 3205306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 11342959 - 11343056
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatt 224  Q
    ||||||||||||  ||  |||||||||| ||||||||| | ||| ||||||||||| |||||||||| ||  ||  |||| |||||||||| ||||||    
T  11342959 tgcaatttgacagtgtgaattttgaaacggattctaagctaacaactgatgctttcatttctactagaaatgacacgtccgaatttggttgcattatt 11343056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 26016394 - 26016503
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| ||||||||||| |||||||| | | | || ||  |||| |||||||| || ||| |||  |||||| |||||||||||||||| |||||||||||    
T  26016394 tgcagtttgacaacgtggattttgacataaactcaaaagtgaccgctgatgccttgcttgctagcaggaacgacttgtccaaatttggctgtattatttc 26016493  T
Q  227 ctccagtcgt 236  Q
     ||| |||||    
T  26016494 atcctgtcgt 26016503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 33611307 - 33611270
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaag 164  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  33611307 tgcaatttgacaatgtcgattttgaaacagattctaag 33611270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 4646220 - 4646128
Alignment:
Q  133 ttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattattt 225  Q
    |||| ||| |||| |||| |||| | ||||| || |||| |||||| ||||||||||| |||||| |||||||  |||||||||| |||||||    
T  4646220 ttgataacatcgactttgcaacatactctaaattaacagttgatgcattcctttctaccaggaacgacttgtctgaatttggttgcattattt 4646128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 17238930 - 17238848
Alignment:
Q  144 gattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    ||||||||||||||||| ||| ||||| | || ||||| || |||||||||||| ||   ||||||||||| | |||||||||    
T  17238930 gattttgaaacagattcgaagctgacatcagacgcttttctgtctactaggaacgacacatccaaatttggctctattatttc 17238848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 41601319 - 41601408
Alignment:
Q  147 tttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttcctccagtcgt 236  Q
    |||| ||||||||||||  | |||| |||||  |||||||||||  |||||||| ||||  ||||||||| ||||||||| ||| |||||    
T  41601319 tttgcaacagattctaaagtaacagttgatgtcttcctttctacacggaacaacctgtctgaatttggttctattatttcttcctgtcgt 41601408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 48769979 - 48770012
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattc 160  Q
    |||||||||||||||| |||||||||||||||||    
T  48769979 tgcaatttgacaacgttgattttgaaacagattc 48770012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 30033448 - 30033550
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    ||||||||||||| || ||||| |||||||| ||||||||||||||||| || |||||||||||||| ||| |||||||| ||||||| || ||||||||    
T  30033448 tgcaatttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttc 30033547  T
Q  227 ctc 229  Q
    |||    
T  30033548 ctc 30033550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 49372190 - 49372244
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgcttt 181  Q
    |||||||||| || || ||||||||||||||||||||||||||  ||||||||||    
T  49372190 tgcaatttgataatgtggattttgaaacagattctaagttgacgtctgatgcttt 49372244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 21701727 - 21701638
Alignment:
Q  147 tttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttcctccagtcgt 236  Q
    |||||||||||||||||  | |||| |||||| |||||||||||  ||||| || || |  ||||||||| ||||||||| ||| |||||    
T  21701727 tttgaaacagattctaaagtaacagttgatgccttcctttctacacggaacgacctgactgaatttggttctattatttcttcctgtcgt 21701638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 40490282 - 40490218
Alignment:
Q  133 ttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaac 197  Q
    |||| ||||| ||||||||||| || |||||| |||||  ||||||||| ||| |||||||||||    
T  40490282 ttgataacgtggattttgaaacggactctaagctgacatatgatgcttttcttgctactaggaac 40490218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 22292245 - 22292354
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || ||||| |||||||| ||||||||||||||||| || |||||||||||||| ||| |||||||| ||||||| || ||||||||    
T  22292245 tgcagtttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttc 22292344  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  22292345 ctcctgtcgt 22292354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 18759582 - 18759693
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| ||||||||  | ||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||| | |||||| ||||||| || ||||||||    
T  18759582 tgcactttgacaatatggattttgaaacagattcaaagttgacaactgatgcattcctttctaccaggaacgatttgtccgaatttggctgcattatttc 18759681  T
Q  227 ctccagtcgtcc 238  Q
    |||| |||||||    
T  18759682 ctcccgtcgtcc 18759693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 28246123 - 28246226
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || |||||||||||| | ||||||||||||||| | || ||||||||||| |||||| |||||||| ||||||| || ||||||||    
T  28246123 tgcagtttgacaatgtggattttgaaacaaactctaagttgacagctcaagccttcctttctaccaggaacgacttgtccgaatttggctgcattatttc 28246222  T
Q  227 ctcc 230  Q
    ||||    
T  28246223 ctcc 28246226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 21092105 - 21092172
Alignment:
Q  159 tctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    ||||||||||||||||||||||||||||| || | |||| |||| ||| ||||||| || ||||||||    
T  21092105 tctaagttgacagctgatgctttcctttcaaccaagaacgacttatccgaatttggctgcattatttc 21092172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 6006309 - 6006207
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    ||||||||||||| || ||||| |||||||| ||||||||||||||||| || |||||||||||||| ||| |||||||| || |||| || ||||||||    
T  6006309 tgcaatttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaacttggatgcattatttc 6006210  T
Q  227 ctc 229  Q
    |||    
T  6006209 ctc 6006207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 31228104 - 31228213
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || ||||| |||||||| |||||||||||| |||| || |||||||||||||| ||| |||||||| ||||||| || ||||||||    
T  31228104 tgcagtttgacaatgtggatttcgaaacagactctaagttgacaactgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttc 31228203  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  31228204 ctcccgtcgt 31228213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 17790018 - 17790127
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || ||||| |||||||| ||||||||||||||||| || |||||||||||||| ||| |||| ||  ||||||| || ||||||||    
T  17790018 tgcagtttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttatctgaatttggatgcattatttc 17790117  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  17790118 ctcctgtcgt 17790127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 19098460 - 19098569
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||| |||||||| || ||||| |||||||| ||||||||||||||||| || |||||||||||||| ||| |||| ||  ||||||| || ||||||||    
T  19098460 tgcagtttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttatctgaatttggatgcattatttc 19098559  T
Q  227 ctccagtcgt 236  Q
    |||| |||||    
T  19098560 ctcctgtcgt 19098569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 53437419 - 53437504
Alignment:
Q  144 gattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttcctc 229  Q
    |||||||||||||| || || || |||| |||||| ||||||||||  |||||| |||||||| |||||||||| |||||||||||    
T  53437419 gattttgaaacagactcaaaattaacagttgatgccttcctttctagcaggaacgacttgtccgaatttggttgcattatttcctc 53437504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 19603193 - 19603095
Alignment:
Q  127 tgcaatttgacaacgtcgattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattattt 225  Q
    |||| ||||| || || ||||| |||||||| || ||||||||||||||||||||||| | ||   |||||||||| ||| ||||||| ||||| ||||    
T  19603193 tgcagtttgataatgtggatttcgaaacagactcgaagttgacagctgatgctttcctctttagccggaacaacttatccgaatttggctgtatcattt 19603095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 53394718 - 53394803
Alignment:
Q  144 gattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttcctc 229  Q
    |||||||||||| | || || || | || |||||| ||||||||||  |||||  |||||||| |||||||||| |||||||||||    
T  53394718 gattttgaaacatactcaaaattaatagttgatgccttcctttctagcaggaatgacttgtccgaatttggttgcattatttcctc 53394803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 16890097 - 16890176
Alignment:
Q  147 tttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    ||||||||||| ||||| |||||| ||||||| ||||||||| | ||| || |||||||  |||||||||| ||||||||    
T  16890097 tttgaaacagactctaaattgacatctgatgccttcctttcttccaggtacgacttgtctgaatttggttgcattatttc 16890176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 9959113 - 9959192
Alignment:
Q  147 tttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    |||||||||||||||||  | |||| |||||| |||||||||||  ||||| || ||||  ||||||||| |||||||||    
T  9959113 tttgaaacagattctaaagtaacagttgatgccttcctttctacacggaacgacctgtctgaatttggttctattatttc 9959192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 191261 - 191179
Alignment:
Q  144 gattttgaaacagattctaagttgacagctgatgctttcctttctactaggaacaacttgtccaaatttggttgtattatttc 226  Q
    ||||||||||||||||| ||| ||||| | || ||||| || |||||||||||| ||   ||||||||||| | |||||||||    
T  191261 gattttgaaacagattcgaagctgacatcagacgcttttctgtctactaggaacgacacatccaaatttggctctattatttc 191179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 582 times since January 2019
Visitors: 3483