View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0486_high_45 (Length: 220)
Name: NF0486_high_45
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_high_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 32244415 - 32244238
Alignment:
| Q |
1 |
ccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
32244415 |
ccaacaaatatacactctgtgatgtctctgtgcacatatat--cttaatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtca |
32244318 |
T |
|
| Q |
101 |
tgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
181 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32244317 |
tgaact-agcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
32244238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 32250123 - 32249947
Alignment:
| Q |
2 |
caacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtcat |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
32250123 |
caacaaatataccctctgtgatgtctctg--cacatatctatcataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcat |
32250026 |
T |
|
| Q |
102 |
gaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
181 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32250025 |
gaact-agcaacctacactgtgtgacgtgtccctttctcacgcttctcttcttactataaatcaccactccacaggttct |
32249947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 32254912 - 32254767
Alignment:
| Q |
36 |
atatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccct |
135 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32254912 |
atatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtgacgtgtccct |
32254813 |
T |
|
| Q |
136 |
tcctcactcttctcttcttactataaatcaccactccacaggttct |
181 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32254812 |
ttctcacgcttctcttcttactataaatcaccactccacaggttct |
32254767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 717 times since January 2019
Visitors: 3489