View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_high_46 (Length: 218)
Name: NF0486_high_46
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 38184841 - 38185045
Alignment:
| Q |
1 |
atatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184841 |
atatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg |
38184940 |
T |
|
| Q |
101 |
tgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184941 |
tgatgtagtcaccatgttcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgc |
38185040 |
T |
|
| Q |
201 |
cacct |
205 |
Q |
| |
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||||| |
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|
| T |
38185041 |
cacct |
38185045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 38180172 - 38180376
Alignment:
| Q |
1 |
atatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180172 |
atatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg |
38180271 |
T |
|
| Q |
101 |
tgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgc |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180272 |
tgacgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaactgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgc |
38180371 |
T |
|
| Q |
201 |
cacct |
205 |
Q |
| |
|
||||| |
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|
| T |
38180372 |
cacct |
38180376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 38170359 - 38170562
Alignment:
| Q |
2 |
tatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgt |
101 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| |
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| T |
38170359 |
tatttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgt |
38170458 |
T |
|
| Q |
102 |
gatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgcc |
201 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| | |||||||| |||||||| ||||||||||| || || | ||||||||||||||||||| ||||| |
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|
| T |
38170459 |
gatgtagtcaccgtgttcatgaaagtaataatagaatatatcaaacaccgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgcc |
38170558 |
T |
|
| Q |
202 |
acct |
205 |
Q |
| |
|
|||| |
|
|
| T |
38170559 |
acct |
38170562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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