View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_high_50 (Length: 212)
Name: NF0486_high_50
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 32244428 - 32244238
Alignment:
| Q |
9 |
atatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32244428 |
atatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatat--cttaatgtgatgtgtaggaaattaagaattcataggcatgcatg |
32244331 |
T |
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| Q |
109 |
ctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
202 |
Q |
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| T |
32244330 |
gtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
32244238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 32250137 - 32249947
Alignment:
| Q |
9 |
atatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatg |
108 |
Q |
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|||||| |||||| |||||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32250137 |
atatgtgaagatagcaacaaatataccctctgtgatgtctctg--cacatatctatcataatgtgatgtgtaggaaattaagaattcataggcatgcatg |
32250040 |
T |
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| Q |
109 |
ctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
202 |
Q |
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| T |
32250039 |
gtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtccctttctcacgcttctcttcttactataaatcaccactccacaggttct |
32249947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 32254912 - 32254767
Alignment:
| Q |
57 |
atatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccct |
156 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32254912 |
atatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtgacgtgtccct |
32254813 |
T |
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| Q |
157 |
tcctcactcttctcttcttactataaatcaccactccacaggttct |
202 |
Q |
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| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32254812 |
ttctcacgcttctcttcttactataaatcaccactccacaggttct |
32254767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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