View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0486_high_8 (Length: 609)
Name: NF0486_high_8
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 238 - 595
Target Start/End: Original strand, 20626454 - 20626808
Alignment:
| Q |
238 |
atatatttggcgtatgtcacgccattgctacaataataattagaaactactagaaattttaatcaattgcctataatcactttaccattccaatcaaaat |
337 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20626454 |
atatatttggcggatgtcacgccataactacaataataattagaaactactagaaattttaatcaattgccta--atcactttaccattccaatcaaaat |
20626551 |
T |
|
| Q |
338 |
gaggcattttgtttactgttggagaatcttctttttcttttctgatcaattgaagcttcccttttatggtgaagagtcaaatttgaagctaatatgtagc |
437 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20626552 |
gaggcatcttgtttactgttggagaatcttctttttcctt-ctgatcaattgaagcttcccttttatggtgaagagtcaaatttgaagctaatatgtagc |
20626650 |
T |
|
| Q |
438 |
tatcacgttcatcnnnnnnnnctctttattgttagtgtttaagggagcatgtccaacataaattcttaatttaagtggcatttgcattggaaaaaataat |
537 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||| |
|
|
| T |
20626651 |
tatcacgttcatcttttttttctctttattgttagtgtttaagggagcatgtccaacataaattctcaatttaagtggcatttgcattgtaaaaaagaat |
20626750 |
T |
|
| Q |
538 |
cataatctcttattactagagttcatcacattcacatgtgattattttttaacggatc |
595 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20626751 |
cataatctcttattaccagagttcatcacattcacatgtgattattttttaacggatc |
20626808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 20626309 - 20626392
Alignment:
| Q |
95 |
ctacacatctacttcgtaccgctggccacaaataagtggaatttcactttggagttttgtgtctttggagtaa-ttgcttaaca |
177 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20626309 |
ctacacatctacttcgcaccgctggccacaaataagtggaatttcactttggagttttgtgtctttggagtaatttgcttaaca |
20626392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1221 times since January 2019
Visitors: 3439