View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_1 (Length: 804)
Name: NF0486_low_1
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 310 - 717
Target Start/End: Complemental strand, 2752200 - 2751797
Alignment:
| Q |
310 |
atatactcgaaacctgaatgggtagctgaagagcgaagtttctgacttggaaattatgaataaataatcggtgaggaagaaactatagttgaacctaggc |
409 |
Q |
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| T |
2752200 |
atatactcgaaacctga-tgggtagctgaagagcgaagtttctgacttggaaattatgaataaataatcggtgaggaagaaactagagttgaacctaggc |
2752102 |
T |
|
| Q |
410 |
tgggaaccagtttagaccatatataaggcctttttaaagcttccaaaaataattaggtaacgagggattgatgaagcaggttggctaagtcacatacatg |
509 |
Q |
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| T |
2752101 |
tgggagccagtttagaccatatacaaggcctttttaaagcttccaaaaataattaggtaacgagggat-gatgaagccagttggctaagtcacatacatg |
2752003 |
T |
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| Q |
510 |
tcctcttgattaactttgaatcaacttaaatataatgaaagcagaattaatcttggttagcagaataaaaatattcattcaaatgaggatattttgatta |
609 |
Q |
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| T |
2752002 |
tcctcttgattaactttgaatcaacttaaata--atgaaagcagaattaatcttggttagcaaaataaaaatattcattcaaatgaggatattttgatta |
2751905 |
T |
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| Q |
610 |
ttacatggacagaaacttcaaaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaaggttctacagccaaattataata |
709 |
Q |
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| T |
2751904 |
ttacatggacagaaacttcaaaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaaggttctacagccatattataata |
2751805 |
T |
|
| Q |
710 |
acatacta |
717 |
Q |
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| T |
2751804 |
acatacta |
2751797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 33 - 284
Target Start/End: Complemental strand, 2752459 - 2752199
Alignment:
| Q |
33 |
tattgttttgtatttggtctgtgtgagtgatggtaagctcttgcacatgttgagtgattgagtctagtgtagcaga-------------taaggaaatag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
2752459 |
tattgttttgtatttggtctgtgtgagtgatggtaagctcttgcacatgttgagtgattgagtctagtgtagcagcagaagggaagaagttaggaaatag |
2752360 |
T |
|
| Q |
120 |
gaagtggcttagattcttccatggttgctcaaccaattagtgtttctgagttaggaagagtcctgtggtgtggaagtaagtaggaatgacttcaacacac |
219 |
Q |
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||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2752359 |
gaagtggcttagattctgccaaggtagctcaaccaattagtgtttctgagttaggaagagtcctgtggtgtggaagta----ggaatgacttcaacacac |
2752264 |
T |
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| Q |
220 |
aatatgtgggttgatggaatgtgatccttcaaaaagaatgtggctgcaaatgaatttggagtgat |
284 |
Q |
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| T |
2752263 |
aatatgtgggttgatagaatgtgatccttcaaaaagaatgtggctgcaaatgaatttggagtgat |
2752199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 687
Target Start/End: Complemental strand, 2800491 - 2800434
Alignment:
| Q |
630 |
aaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaag |
687 |
Q |
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|||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||| |
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| T |
2800491 |
aaatgatgtctgaatggagtccaaatataggtcttgattacaaggttttgaatcaaag |
2800434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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