View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0486_low_10 (Length: 572)
Name: NF0486_low_10
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 30 - 567
Target Start/End: Original strand, 48729848 - 48730385
Alignment:
| Q |
30 |
gttgcctgcttcatcctcccaattcagaacccgtttttccttgtggtgagaacgtctgtggcatgtccttcgaagccaaccaagcaagatctcaagaaca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48729848 |
gttgcctgcttcatcctcccaattcagaacccgtttttccttgtggtgagaacgtctgtggcatgtccttcgaagccaaccaagcaagatctcaagaaca |
48729947 |
T |
|
| Q |
130 |
tgaaactgcttatatttcacagcaatatgcagagcagtctcacttcgaactgtaacatcttcaatacaacctggacaaacagacaggaattttactacaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48729948 |
tgaaactgcttatatttcacagcaatatgcagagcagtctcacttcgaactgtaacatcttcaatacaacctggacaaacaaacaggaattttactacaa |
48730047 |
T |
|
| Q |
230 |
gatcaaagtttccagtttgagtagcaatatgcaatggagttagaccctctatccctttgactcggacaagatctttattaatatctacaaagcgacaaac |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48730048 |
gatcaaagtttccagtttgagtagcaatatgcaatggagttagaccctctctccctttgactcggacaaggtctttattaatatctacaaagcgacaaac |
48730147 |
T |
|
| Q |
330 |
cattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48730148 |
cattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtg |
48730247 |
T |
|
| Q |
430 |
gcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaattatagcgttctaagatgtaaggatccatttgaatca |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48730248 |
gcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaattatagcgttctaagatgtaaggatcgatttgaatca |
48730347 |
T |
|
| Q |
530 |
gtttgtatagcaagtctatatctcccatctgtgctgct |
567 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
48730348 |
gtttgaatagcaagtctatatctcccatttgtgctgct |
48730385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 343 - 493
Target Start/End: Complemental strand, 4819091 - 4818941
Alignment:
| Q |
343 |
ttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtat |
442 |
Q |
| |
|
|||||||| | ||||||||| || ||||||| ||| | | ||||| |||||||||||||||||||||| |||||||||| | |||||| || |
|
|
| T |
4819091 |
ttgttttgcatagcaagatggataggactgaatccttgttgatttagcttccaagcaaatgaaggttttaacttcataatctcggaggcaaattggagat |
4818992 |
T |
|
| Q |
443 |
gtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
493 |
Q |
| |
|
| || || ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4818991 |
gacccatagatgcagcaatatgcaaaggagtttcaacaaatggtattaaat |
4818941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 493
Target Start/End: Original strand, 31040743 - 31040851
Alignment:
| Q |
385 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatg |
484 |
Q |
| |
|
||||| ||||| |||||||||||||| | ||||||||| ||||||||||| |||||| || |||||| ||||||| |||||| |||||||||| |
|
|
| T |
31040743 |
tttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgaacatgtcccatagatgcagctatatgcagaggagtttcaacaaatg |
31040842 |
T |
|
| Q |
485 |
gtattaaat |
493 |
Q |
| |
|
| ||||||| |
|
|
| T |
31040843 |
gaattaaat |
31040851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 31075952 - 31076001
Alignment:
| Q |
385 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
434 |
Q |
| |
|
||||| ||| |||||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
31075952 |
tttagcttcaaagcaaatgaaggtttcaatctcataatttcagtggcaaa |
31076001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 493
Target Start/End: Complemental strand, 28865196 - 28865156
Alignment:
| Q |
453 |
tgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
493 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
28865196 |
tgcagcgatatgtaaaggagtttcaacaaatggtattaaat |
28865156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 30648044 - 30648008
Alignment:
| Q |
453 |
tgcagcaatatgcaaaggagtatcaacaaatggtatt |
489 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
30648044 |
tgcagcaatatgtaaaggagtttcaacaaatggtatt |
30648008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 434
Target Start/End: Original strand, 26087519 - 26087599
Alignment:
| Q |
354 |
agcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
434 |
Q |
| |
|
||||||||| |||||||||| ||| | || ||||||||||||||| |||||||||| | ||||||| ||||||||||| |
|
|
| T |
26087519 |
agcaagatggatgggactgaatccttgctgatttagtttccaagcatatgaaggtttcaaattcataatttcagtggcaaa |
26087599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1694 times since January 2019
Visitors: 3461