View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_11 (Length: 571)
Name: NF0486_low_11
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 92 - 561
Target Start/End: Complemental strand, 37962905 - 37962436
Alignment:
| Q |
92 |
tttttctcttccgatcttcattttcaatctcaaattataataacattatatctaacttctaatctcattcattgcaggactccgacaatgattgcgtcta |
191 |
Q |
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| T |
37962905 |
tttttctcttccgatcttcattttcaatctcaaattataataacattatatctaacttctaatctcattcattgcaggactccgacaatgattgcgtcta |
37962806 |
T |
|
| Q |
192 |
cacggtgtacgttcgaaccggttcgattctaaaaggaggaaccgattcaaagatcggagtcaaactatacgacaaatacggatactacatctacatcaag |
291 |
Q |
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| T |
37962805 |
cacggtctacgttcgaaccggttcgattctaaaaggaggaaccgattcaaagatcggagtcaaactatacgacaaatacggatactacatctacatcaag |
37962706 |
T |
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| Q |
292 |
aacctcgaatcatggggcgggttaatgggttcaggtttcaattacttcgaacgtggtaaccttgatatattcagtggaagaggaccttgtttagaaggac |
391 |
Q |
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| T |
37962705 |
aacctcgaatcatggggcgggttaatgggttcaggtttcaattacttcgaacgtggtaaccttgatattttcagtggaagaggaccttgtttagaaggac |
37962606 |
T |
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| Q |
392 |
ccgtttgtgctgttaatgttacatctgacggtgatggtccacatcatggttggtactgtaactacgtggaagtgactagtactgggccccatgtgtcgtg |
491 |
Q |
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| T |
37962605 |
ccgtttgtgctgttaatgttacatctgacggtgatggtccacatcatggttggtactgtaactacgtggaagtgactagtactgggccccatgtgtcgtg |
37962506 |
T |
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| Q |
492 |
ttctcaggagcagttcacggtggaacagtggcttgcgactgatactagtccttatcaattgtggtctgtg |
561 |
Q |
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| T |
37962505 |
ttctcaggagcagttcacggtggaacagtggcttgcgactgatactagtccttatcaattgtggtctgtg |
37962436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 401
Target Start/End: Complemental strand, 39667650 - 39667430
Alignment:
| Q |
181 |
gattgcgtctacacggtgtacgttcgaaccggttcgattctaaaaggaggaaccgattcaaagatcggagtcaaactatacgacaaatacggatactaca |
280 |
Q |
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||||| || ||||||||||||||| ||||||| ||||| | ||||||||||| || |||| || ||| |||| ||||| ||| |||||||||| | |
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| T |
39667650 |
gattgtgtgtacacggtgtacgttagaaccgggtcgatcttcaaaggaggaacagactcaatcattggactcaagctatatgactcatacggatacggta |
39667551 |
T |
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| Q |
281 |
tctacatcaagaacctcgaatcatggggcgggttaatgggttcaggtttcaattacttcgaacgtggtaaccttgatatattcagtggaagaggaccttg |
380 |
Q |
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| ||||||||||| || || | |||||| |||||||||||| | | || || |||| ||||| || |||||||||||||||||||| | ||| ||||| |
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| T |
39667550 |
tatacatcaagaatcttgagttatggggtgggttaatgggtccggattataactactatgaacggggcaaccttgatatattcagtggcaaaggtccttg |
39667451 |
T |
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| Q |
381 |
tttagaaggacccgtttgtgc |
401 |
Q |
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||| |||||||| |||||||| |
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| T |
39667450 |
tttggaaggacctgtttgtgc |
39667430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 398
Target Start/End: Complemental strand, 39663350 - 39663254
Alignment:
| Q |
302 |
catggggcgggttaatgggttcaggtttcaattacttcgaacgtggtaaccttgatatattcagtggaagaggaccttgtttagaaggacccgtttg |
398 |
Q |
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|||||||||||||||||||||| |||| || ||||| || || || |||||||||||||||||||| ||||| |||||||| || ||||| ||||| |
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| T |
39663350 |
catggggcgggttaatgggttcgggttataactactttgagcggggcaaccttgatatattcagtggtagaggtccttgtttggatggacctgtttg |
39663254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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