View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_12 (Length: 503)
Name: NF0486_low_12
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 158 - 343
Target Start/End: Complemental strand, 12088639 - 12088452
Alignment:
| Q |
158 |
ttgatgattattggtgatgataaatgaatattacggtgataataaatggtgaagttaaataaaagtcttagggtgatgaacatttgtgatgaattgttgt |
257 |
Q |
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| T |
12088639 |
ttgatgattattggtgatgataaattaatattacggtgataataaatggtgatgctaaataaaagtcttagggtgatgaatatttgtgatgaattgttgt |
12088540 |
T |
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| Q |
258 |
tgtctatatatggtgagtcttcatgcatcat--cataattagaattcaggtgatgattcgtgatgtgttgtattgctcaggaatataa |
343 |
Q |
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| T |
12088539 |
tgtttatatatggtgagtcttcatgcatcataacataattagaattttggtgatgattggtgatgtgttgtattgctcaggaacataa |
12088452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 12088812 - 12088662
Alignment:
| Q |
7 |
atagtaaaagtttgtagtggcataattggtgtagttatatggacgtaaatggtggtggtggtgttaatatatgaggtgagactattgttaattatgatga |
106 |
Q |
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| T |
12088812 |
atagtaaaagtttgtagtggcataactggtgtagttatatggacgtaaatggtggtggtggtgtta--atatgaggtgagactattgttaattttgatga |
12088715 |
T |
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| Q |
107 |
tattgttggtgatatatatatnnnnnnnnntctggtgatgtataaaataaattg |
160 |
Q |
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| T |
12088714 |
tattgttggtgatatatatat-aagaaaaatctggtgatgtataaaataaattg |
12088662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 428
Target Start/End: Complemental strand, 12088273 - 12088208
Alignment:
| Q |
363 |
aaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatatacgtgatgatgt |
428 |
Q |
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| T |
12088273 |
aaaccgataccagtatatatataggtgataggaaagagttgcattctcgtatatacatgatgatgt |
12088208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 24562893 - 24562825
Alignment:
| Q |
349 |
attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatata |
417 |
Q |
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| T |
24562893 |
attttgttgagtagataccgataccggcatgcatataggtgttaggaaagagttgcatcttcgcatata |
24562825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 24603927 - 24603859
Alignment:
| Q |
349 |
attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatata |
417 |
Q |
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| T |
24603927 |
attttgttgagtagataccgataccggcatgcatataggtgttaggaaagagttgcatcttcgcatata |
24603859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 17446000 - 17445951
Alignment:
| Q |
377 |
atgcatataggtgataggaaagagttgcattctcgcatatacgtgatgat |
426 |
Q |
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| T |
17446000 |
atgcatatgggtgttaggaaagagttgcatcttcgcatatacatgatgat |
17445951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 8885876 - 8885819
Alignment:
| Q |
349 |
attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcat |
406 |
Q |
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| T |
8885876 |
attttggtgagtagagaccggtaccggtatgcatatgggtgataggaaggagttgcat |
8885819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 977426 - 977373
Alignment:
| Q |
349 |
attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagtt |
402 |
Q |
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| T |
977426 |
attttggtgagtagagatcgataccggcatgcatataggtgttaggaaagagtt |
977373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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