View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0486_low_14 (Length: 454)

Name: NF0486_low_14
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0486_low_14
NF0486_low_14
[»] chr4 (6 HSPs)
chr4 (74-198)||(22398169-22398293)
chr4 (292-374)||(22397996-22398076)
chr4 (127-179)||(897682-897734)
chr4 (129-183)||(42874131-42874185)
chr4 (130-167)||(1236432-1236469)
chr4 (129-182)||(2685492-2685545)
[»] chr3 (4 HSPs)
chr3 (90-183)||(34804650-34804743)
chr3 (127-181)||(20847574-20847628)
chr3 (127-181)||(39213686-39213740)
chr3 (129-165)||(49757819-49757855)
[»] chr5 (3 HSPs)
chr5 (129-177)||(31746594-31746642)
chr5 (129-180)||(23936630-23936681)
chr5 (129-177)||(31763894-31763942)
[»] chr7 (6 HSPs)
chr7 (129-180)||(33293604-33293655)
chr7 (93-168)||(7606553-7606628)
chr7 (90-181)||(18891748-18891839)
chr7 (134-183)||(42814019-42814068)
chr7 (130-182)||(35217525-35217577)
chr7 (86-122)||(41557837-41557873)
[»] chr1 (4 HSPs)
chr1 (86-181)||(5613215-5613310)
chr1 (129-185)||(9529553-9529609)
chr1 (86-182)||(12468425-12468523)
chr1 (129-168)||(35794007-35794046)
[»] chr6 (3 HSPs)
chr6 (129-181)||(14696681-14696733)
chr6 (96-181)||(14702864-14702949)
chr6 (96-181)||(14703149-14703234)
[»] chr2 (1 HSPs)
chr2 (129-168)||(13141982-13142021)
[»] scaffold0457 (1 HSPs)
scaffold0457 (129-167)||(2250-2288)
[»] chr8 (1 HSPs)
chr8 (129-182)||(23038914-23038967)
[»] scaffold0027 (1 HSPs)
scaffold0027 (139-183)||(137348-137392)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 22398293 - 22398169
Alignment:
Q  74 tctattgttcctattcttcatgtattaaatatgtctcttgaagtcatgtttaccgtgtgagaatgaatattatatatgttaaaaatataaagtgaacgta 173  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  22398293 tctattgtttatattcttcatgtattaaatatgtctcttgaagtcatgtttattgtgtgagaatgaatattatatatgttaaaaatataaagtgagcgta 22398194  T
Q  174 aattttaaccatgttatatatatca 198  Q
    |||||||||| ||||||||||||||    
T  22398193 aattttaaccctgttatatatatca 22398169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 22398076 - 22397996
Alignment:
Q  292 gttaccattttaaacgtagacgaagagcgtcatcaatattatttatttgtttgatcttttatttgtgtcttcatgtattcttt 374  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  22398076 gttaccattttgaacgtagacgaagagcgtcatcaatattatttatttgtttgatcttttatt--tgtcttcatgtattcttt 22397996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 897734 - 897682
Alignment:
Q  127 cgtgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaatttt 179  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||  |||||||||    
T  897734 cgtgtgagattgaatataatatatgttaaaaatataatgtgattgtaaatttt 897682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 42874131 - 42874185
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaacc 183  Q
    ||||||||| ||||||||||| |||| ||||| |||||||  |||||||||||||    
T  42874131 tgtgagaataaatattatataggttagaaatacaaagtgattgtaaattttaacc 42874185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 1236469 - 1236432
Alignment:
Q  130 gtgagaatgaatattatatatgttaaaaatataaagtg 167  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  1236469 gtgagaatgaatattatatatattaaaaatacaaagtg 1236432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 2685545 - 2685492
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaac 182  Q
    ||||||||| |||||||||||| ||| ||||| ||||| | |||||||||||||    
T  2685545 tgtgagaataaatattatatattttagaaatacaaagtaatcgtaaattttaac 2685492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 34804743 - 34804650
Alignment:
Q  90 ttcatgtattaaatatgtctcttgaagtcatgtttaccgtgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaacc 183  Q
    ||||||||||||||| ||||| |  |||||||  |  | ||||||||  |||||||||||||||| ||||||||||||| ||||||||||||||    
T  34804743 ttcatgtattaaataagtctccttcagtcatgcatgtcatgtgagaaaaaatattatatatgttagaaatataaagtgatcgtaaattttaacc 34804650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 20847628 - 20847574
Alignment:
Q  127 cgtgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaa 181  Q
    |||||||||||| |||| ||||||||||||||||||| ||||  |||||||||||    
T  20847628 cgtgtgagaatggatataatatatgttaaaaatataatgtgattgtaaattttaa 20847574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 39213686 - 39213740
Alignment:
Q  127 cgtgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaa 181  Q
    ||||||| ||||||||||||||||| |||||||| || ||||  |||||||||||    
T  39213686 cgtgtgaaaatgaatattatatatgataaaaatacaatgtgattgtaaattttaa 39213740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 49757819 - 49757855
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaag 165  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  49757819 tgtgagaataaatattatatatgttagaaatataaag 49757855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 31746594 - 31746642
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaatt 177  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  31746594 tgtgagaatgaatattatatatgttagaaatacaaagtgaaagtaaatt 31746642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 23936630 - 23936681
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaatttta 180  Q
    ||||||||| |||||||||||||||| ||||| ||||| | |||||||||||    
T  23936630 tgtgagaataaatattatatatgttagaaatacaaagtcatcgtaaatttta 23936681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 31763894 - 31763942
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaatt 177  Q
    |||||||||||||||||||||||||| ||||| ||| | || |||||||    
T  31763894 tgtgagaatgaatattatatatgttagaaatacaaaataaaagtaaatt 31763942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 33293655 - 33293604
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaatttta 180  Q
    ||||||||| |||||||||||||||||||||| |||||||  ||||||||||    
T  33293655 tgtgagaataaatattatatatgttaaaaatacaaagtgattgtaaatttta 33293604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 7606628 - 7606553
Alignment:
Q  93 atgtattaaatatgtctcttgaagtcatgtttaccgtgtgagaatgaatattatatatgttaaaaatataaagtga 168  Q
    |||||||||||||| |||||  |||||||  |  | | ||||||| |||||||||||||||||||||| |||||||    
T  7606628 atgtattaaatatgactcttatagtcatgcatgtcatatgagaataaatattatatatgttaaaaatacaaagtga 7606553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 18891839 - 18891748
Alignment:
Q  90 ttcatgtattaaatatgtctcttgaagtcatgtttaccgtgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaa 181  Q
    ||||||||||||||||| |||||  ||||||   | |  |||||||||||||||||||||| ||| ||||| |||||||  |||| ||||||    
T  18891839 ttcatgtattaaatatgactctttgagtcatacatgcaatgtgagaatgaatattatatatattacaaatacaaagtgattgtaacttttaa 18891748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 42814068 - 42814019
Alignment:
Q  134 gaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaacc 183  Q
    ||||||||||||||||||||| ||||| ||| |||  |||||||||||||    
T  42814068 gaatgaatattatatatgttagaaatacaaattgattgtaaattttaacc 42814019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 35217577 - 35217525
Alignment:
Q  130 gtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaac 182  Q
    |||| ||| |||||||||||||||||| ||| ||| ||| |||||||||||||    
T  35217577 gtgataataaatattatatatgttaaagatacaaattgatcgtaaattttaac 35217525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 41557873 - 41557837
Alignment:
Q  86 attcttcatgtattaaatatgtctcttgaagtcatgt 122  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  41557873 attcttcatgtattaaatatgactcttaaagtcatgt 41557837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 5613215 - 5613310
Alignment:
Q  86 attcttcatgtattaaatatgtctcttgaagtcatgtttaccgtgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaa 181  Q
    |||||| ||||||||||||||  | ||  |||||||  || | |||||||||||||||||||||||||||||||| |||| |   |||||||||||    
T  5613215 attctttatgtattaaatatgattttttgagtcatgaatatcatgtgagaatgaatattatatatgttaaaaatacaaagcggttgtaaattttaa 5613310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 9529553 - 9529609
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaaccat 185  Q
    |||||||||||||||||||||||||| ||||| ||  |||  |||||||||||||||    
T  9529553 tgtgagaatgaatattatatatgttagaaatacaatttgattgtaaattttaaccat 9529609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 12468425 - 12468523
Alignment:
Q  86 attcttcatgtattaaatatgtctcttgaagtcatgtttaccgtgtgagaatgaatattata--tatgttaaaaatataaagtgaacgtaaattttaac 182  Q
    ||||||||||||||||| | |  | || ||||||||  || | ||||||||| |||||||||  ||||||||||||| ||||||| |||||||| ||||    
T  12468425 attcttcatgtattaaacaagatttttaaagtcatgcatatcatgtgagaataaatattataaatatgttaaaaatagaaagtgatcgtaaattctaac 12468523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 35794007 - 35794046
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtga 168  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  35794007 tgtgagaataaatattatatatgttaaaaatacaaagtga 35794046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 14696733 - 14696681
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaa 181  Q
    |||||||||||||||||||||||| |  |||| ||||||| ||||||||||||    
T  14696733 tgtgagaatgaatattatatatgtaagtaatacaaagtgatcgtaaattttaa 14696681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 14702949 - 14702864
Alignment:
Q  96 tattaaatatgtctcttgaagtcatgtttaccgtgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaa 181  Q
    |||||||||| | ||||  |||||||| |  | |||||||||||||||||||||||| |  |||| |||||||  |||||||||||    
T  14702949 tattaaatatttgtcttagagtcatgtatgtcatgtgagaatgaatattatatatgtaagtaatacaaagtgattgtaaattttaa 14702864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 14703234 - 14703149
Alignment:
Q  96 tattaaatatgtctcttgaagtcatgtttaccgtgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaa 181  Q
    |||||||||| | ||||  |||||||| |  | |||||||||||||||||||||||| |  |||| |||||||  |||||||||||    
T  14703234 tattaaatatttgtcttagagtcatgtatgtcatgtgagaatgaatattatatatgtaagtaatacaaagtgattgtaaattttaa 14703149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 13141982 - 13142021
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtga 168  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  13141982 tgtgagaattaatattatatatgtttaaaatataaagtga 13142021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 2288 - 2250
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtg 167  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  2288 tgtgagaataaatattatatatgttaaaaatacaaagtg 2250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 23038914 - 23038967
Alignment:
Q  129 tgtgagaatgaatattatatatgttaaaaatataaagtgaacgtaaattttaac 182  Q
    ||||||||||||||||| |||||||| ||||| || ||||  ||||||||||||    
T  23038914 tgtgagaatgaatattacatatgttagaaatacaacgtgattgtaaattttaac 23038967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 137392 - 137348
Alignment:
Q  139 aatattatatatgttaaaaatataaagtgaacgtaaattttaacc 183  Q
    |||||||||||| ||| |||||||||||||  |||||||||||||    
T  137392 aatattatatatattagaaatataaagtgattgtaaattttaacc 137348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 97 times since January 2019
Visitors: 3464