View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_15 (Length: 439)
Name: NF0486_low_15
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 149 - 432
Target Start/End: Complemental strand, 10508388 - 10508105
Alignment:
| Q |
149 |
tgtatatccttatttaaacttagaaccaccaaaagatatcataaaacaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgat |
248 |
Q |
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| T |
10508388 |
tgtatatccttatttaaacttagaaccaccaaaagatatcataaaaaaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgat |
10508289 |
T |
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| Q |
249 |
atgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattaggtagaatactttcagggatattgattgttgatcctgctg |
348 |
Q |
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| T |
10508288 |
atgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagttttccattaggtagaatacttttagggatattgattgttgatcctcctg |
10508189 |
T |
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| Q |
349 |
ttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatagggaagtccaaagctctgtgctg |
432 |
Q |
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| T |
10508188 |
atgcgaagtttgcaccatgtgtgaagttagacccaagagaattaagatatggacttagatagggaagtcgaaagctccgtgctg |
10508105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 153 - 432
Target Start/End: Complemental strand, 10502679 - 10502399
Alignment:
| Q |
153 |
tatccttatttaaacttagaaccaccaaaagatatcat--aaaacaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgatat |
250 |
Q |
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| T |
10502679 |
tatccttaattaaactcggaatcaccaaaagatatcaacgaaaacaacgggaaa-atattttaatttaccttgatcccgaatgagatttgttttggatat |
10502581 |
T |
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| Q |
251 |
gaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattaggtagaatactttcagggatattgattgttgatcctgctgtt |
350 |
Q |
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| T |
10502580 |
gaaatctttgaattgaatgtactgaatttgaagagaaaatggactaaatatcccattaggtataatactattagggatattgattgttgatcctcctgtt |
10502481 |
T |
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| Q |
351 |
gcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatagggaagtccaaagctctgtgctg |
432 |
Q |
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| T |
10502480 |
gcgaagtttgcaccatgtgtgaagttagacccaagagaattaagatatggacttagatagggaagtccaaagctctgtgctg |
10502399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 211 - 432
Target Start/End: Complemental strand, 10499680 - 10499459
Alignment:
| Q |
211 |
ttaatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattagg |
310 |
Q |
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| T |
10499680 |
ttaatttaccttgatccctaatgaattttgcttttggtatgaaatctttgaattgaatggactgaatttgaagggaaaatggactaaacattccattagg |
10499581 |
T |
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| Q |
311 |
tagaatactttcagggatattgattgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatag |
410 |
Q |
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| T |
10499580 |
tataatactattaggaattttgattgttgaccctgctgttgcaaagtttgcaccatgtgtgaaatttgaccccagagaattaagatatggacttagatag |
10499481 |
T |
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| Q |
411 |
ggaagtccaaagctctgtgctg |
432 |
Q |
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| T |
10499480 |
ggaagtccaaagctttgtgctg |
10499459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 213 - 432
Target Start/End: Complemental strand, 10485300 - 10485081
Alignment:
| Q |
213 |
aatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattaggta |
312 |
Q |
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| T |
10485300 |
aattgaccttgatccctaatgaattttgttctgggtatgaaatctctgaattgaatgtactgaattcgaaggtaaaatggactgaacattccattaggta |
10485201 |
T |
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| Q |
313 |
gaatactttcagggatattgattgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagataggg |
412 |
Q |
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| T |
10485200 |
taatactattaggaattttgattgttgacgctgctgttgcaaagtttacaccatgtgtgaagttgggtccgagagaattaaggtatggactaagaaaggg |
10485101 |
T |
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| Q |
413 |
aagtccaaagctctgtgctg |
432 |
Q |
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| T |
10485100 |
aagtccaaagctctgtgctg |
10485081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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