View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_16 (Length: 431)
Name: NF0486_low_16
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 93 - 422
Target Start/End: Original strand, 5603923 - 5604250
Alignment:
| Q |
93 |
tttagaaattgtgacaatgaattaatttgtgaatcacggtgctataagtataagcaaatacacaaacaacttactagtctgaaaattagtttcctgtgat |
192 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5603923 |
tttagaaattgtgaca--gaattaatttgtgaatgacggtgctataagtaaaagcaaatacacaaacaacttattagtctgaaaattagtttcctgtgat |
5604020 |
T |
|
| Q |
193 |
ttcagaattcaaacatgctatattgagatcttatttggtcgattcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaa |
292 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604021 |
ttcagaattcaaacatgctatattgagatcttatttggtcgattcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaa |
5604120 |
T |
|
| Q |
293 |
accaagtggtgttcatgtggtgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaac |
392 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604121 |
accaagtggtgttcatgtggtgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaac |
5604220 |
T |
|
| Q |
393 |
taaatttattccccaagttatcagtataat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
5604221 |
taaatttattccccaagttatcagtataat |
5604250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 93 - 422
Target Start/End: Complemental strand, 5631447 - 5631120
Alignment:
| Q |
93 |
tttagaaattgtgacaatgaattaatttgtgaatcacggtgctataagtataagcaaatacacaaacaacttactagtctgaaaattagtttcctgtgat |
192 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5631447 |
tttagaaattgtgaca--gaattaatttgtgaatgacggtgctataagtaaaagcaaatacacaaacaacttattagtctgaaaattagtttcctgtgat |
5631350 |
T |
|
| Q |
193 |
ttcagaattcaaacatgctatattgagatcttatttggtcgattcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5631349 |
ttcagaattcaaacatgctatattgagatcttatttggtcgattcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaa |
5631250 |
T |
|
| Q |
293 |
accaagtggtgttcatgtggtgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaac |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5631249 |
accaagtggtgttcatgtggtgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaac |
5631150 |
T |
|
| Q |
393 |
taaatttattccccaagttatcagtataat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
5631149 |
taaatttattccccaagttatcagtataat |
5631120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 5648984 - 5648848
Alignment:
| Q |
93 |
tttagaaattgtgacaatgaattaatttgtgaatcacggtgctataagtataagcaaatacacaaacaacttactagtctgaaaattagtttcctgtgat |
192 |
Q |
| |
|
||||||||||||||| | | |||| ||||||||| | ||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||| |||||| |
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| T |
5648984 |
tttagaaattgtgaccaagcattagtttgtgaatgatggtgctataagtaaaagcaaacacacaaacaacttactagtttaaaaattagtttcatgtgat |
5648885 |
T |
|
| Q |
193 |
ttcagaattcaaacatgctatattgagatcttatttg |
229 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| |
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| T |
5648884 |
ttcagaattcaaacatgctatattgaaatcatatttg |
5648848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 422
Target Start/End: Complemental strand, 13168430 - 13168321
Alignment:
| Q |
313 |
tgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagtta |
412 |
Q |
| |
|
|||| |||||||||||| ||| | ||||||||||||| ||||||| |||||||| ||| ||| || ||||||| |||||||||| ||||||||||||||| |
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| T |
13168430 |
tgcatgagctcttcaagcgaacatctgctcataaacagaattattatgcagtaacataaaattgagcagagcctgtaaactaaacttattccccaagtta |
13168331 |
T |
|
| Q |
413 |
tcagtataat |
422 |
Q |
| |
|
|||||||||| |
|
|
| T |
13168330 |
tcagtataat |
13168321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 313 - 418
Target Start/End: Complemental strand, 5648718 - 5648613
Alignment:
| Q |
313 |
tgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagtta |
412 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||| || ||||||||||||| ||| |||||||||||||| |||||| |||||| ||||||| ||| |
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| T |
5648718 |
tgcatgagctcttcaagagaatacctgttcataaacagaaatattttgcagtaacataaaatggaacagagcctctaaactgaatttagtccccaaatta |
5648619 |
T |
|
| Q |
413 |
tcagta |
418 |
Q |
| |
|
|||||| |
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|
| T |
5648618 |
tcagta |
5648613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 422
Target Start/End: Original strand, 6307144 - 6307247
Alignment:
| Q |
319 |
agctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagta |
418 |
Q |
| |
|
|||||||||||| || |||| ||||||||| ||||||||||||||| ||| |||||||||||| | |||||||||||||||||| |||||||| ||| |
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| T |
6307144 |
agctcttcaagtaaagacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggta |
6307243 |
T |
|
| Q |
419 |
taat |
422 |
Q |
| |
|
|||| |
|
|
| T |
6307244 |
taat |
6307247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 13168642 - 13168570
Alignment:
| Q |
93 |
tttagaaattgtgacaatgaattaatttgtgaatcacggtgctataagtataagcaaatacacaaacaactta |
165 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| | ||||||| ||||| ||||||| | |||||||||||| |
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|
| T |
13168642 |
tttagaaattgtgagcaagaattaatttgtgaatgatggtgctagaagtaaaagcaaacatacaaacaactta |
13168570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 5648802 - 5648736
Alignment:
| Q |
247 |
tttttctctcctcttcagttgttgct---ttcatcttctgtggaaccaaaccaagtggtgttcatgtggt |
313 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||||||||||||| || ||||||||||||| |
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|
| T |
5648802 |
tttttctctcctcttcagctgttgctttcttcttcttctgtggaaccaaacaaa---gtgttcatgtggt |
5648736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 13168523 - 13168464
Alignment:
| Q |
234 |
attcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaac |
294 |
Q |
| |
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|||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
13168523 |
attcattcgacattttttctctcctcttcag-aattgctttgttcttctgtggaaccaaac |
13168464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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