View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_2 (Length: 687)
Name: NF0486_low_2
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 54 - 370
Target Start/End: Original strand, 43748745 - 43749063
Alignment:
| Q |
54 |
gttggcttgtatcctaaagctagtttgttcttggagcctttgtgaagaggagtctcataaccatgctaacatgcacatgtacttagtgccaaacatatat |
153 |
Q |
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| T |
43748745 |
gttggcttgtatcctaaagctagtttgttcttggagcctttgtgaagaggagtctcataaccatgctaacatgcacatgtacttagtgccaaacatatat |
43748844 |
T |
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| Q |
154 |
ttatttggattcctagtgaatcaaaatgaagggnnnnnnn--ttatgttgatataagctataagcctagtaattgtttctactctctatgcaacaaatgt |
251 |
Q |
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| T |
43748845 |
ttatttggattcctagtgaatcaaaatgaagggggaaaaaaattatgttgatataagctataagcctagtaattgtttctactctctatgcaacaaatgt |
43748944 |
T |
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| Q |
252 |
ggcatcaattgcagttttggtcttcatatttttatcggtttaccgaattgatcctcctttttcaaatcaaattttttgtctcgcaactcaaatttttaaa |
351 |
Q |
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| T |
43748945 |
ggcatcaattgcagttttgatcttcatatttttatcgatttaccgaattgatcctccttttttaaatcaaattttttgtctctcaactcaaatttttaaa |
43749044 |
T |
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| Q |
352 |
acaatggtaatgtggtaag |
370 |
Q |
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|||||| |||||||||||| |
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| T |
43749045 |
acaatgataatgtggtaag |
43749063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 391 - 670
Target Start/End: Original strand, 43749277 - 43749556
Alignment:
| Q |
391 |
taaatctgtagatgtggaattatctaagtggatttatacaaagtggatgagttgacaattgacatttacctctccaactcatatgcaagtgttgcagcat |
490 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |
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| T |
43749277 |
taaatccgtagatgtagaattatctaagtggatttatacaaagtggatgagttgacaattgacatttacctctgctactcatatgcaagtgttgccgcat |
43749376 |
T |
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| Q |
491 |
gaacattttaggatggcaaatagtttatcgaaggggaaaatcttctaatctacatttaggggtgttttcacgttggggtggactgattttgaccaaatcc |
590 |
Q |
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| T |
43749377 |
gaacattttaggaaggcaaatagtttatcgaaggggaaaatcttctaatctacatttagggatgttttcacgttggggtggactgattttgaccaaatcc |
43749476 |
T |
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| Q |
591 |
attacccgacccaattaaatttaatttgtttggattagataaaatacttgtattttataatgtcaatccccgagttaagt |
670 |
Q |
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| T |
43749477 |
attacccgacccacttaaatttaatttgtttggattagataaaatacttgtattttataatgtcaatccccgagttaagt |
43749556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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