View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0486_low_20 (Length: 404)

Name: NF0486_low_20
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0486_low_20
NF0486_low_20
[»] chr1 (4 HSPs)
chr1 (88-394)||(44834348-44834654)
chr1 (88-394)||(44816991-44817297)
chr1 (92-158)||(44838060-44838126)
chr1 (95-158)||(44849147-44849210)
[»] chr3 (1 HSPs)
chr3 (88-256)||(17571007-17571175)
[»] chr4 (1 HSPs)
chr4 (239-396)||(23396549-23396704)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 88 - 394
Target Start/End: Complemental strand, 44834654 - 44834348
Alignment:
Q  88 atcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacctgcgtggcatcatca 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44834654 atcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacctgcgtggcatcatca 44834555  T
Q  188 gctgaggaaagagagtagcttccggcaccacctcctagagatagcaacactttgatgcctttgctttgacaagtttgaatttcactactaaactttgtgc 287  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44834554 gctgaggaaagagagtagcttccggcaccacctccgagagatagcaacactttgatgcctttgctttgacaagtttgaatttcactactaaactttgtgc 44834455  T
Q  288 aaccgtttgaggctggatcacaatggccagcaaggtttagagttggagtttggccattgccaaaagtggatagaaaagctatgtttacaaattggtagtt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44834454 aaccgtttgaggctggatcacaatggccagcaaggtttagagttggagtttggccattgccaaaagtggatagaaaagctatgtttacaaattggtagtt 44834355  T
Q  388 gtctgtg 394  Q
    || ||||    
T  44834354 gtttgtg 44834348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 88 - 394
Target Start/End: Complemental strand, 44817297 - 44816991
Alignment:
Q  88 atcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacctgcgtggcatcatca 187  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| | ||| || | |    
T  44817297 atcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcgtaa 44817198  T
Q  188 gctgaggaaagagagtagcttccggcaccacctcctagagatagcaacactttgatgcctttgctttgacaagtttgaatttcactactaaactttgtgc 287  Q
    |  ||| | |||||||||||||| |  |||||||| | ||| ||||||||||||||||||||||||||||||||||| || ||  ||||||| |||||||    
T  44817197 gacgagtagagagagtagcttccagtgccacctccgatagagagcaacactttgatgcctttgctttgacaagtttggatatctttactaaagtttgtgc 44817098  T
Q  288 aaccgtttgaggctggatcacaatggccagcaaggtttagagttggagtttggccattgccaaaagtggatagaaaagctatgtttacaaattggtagtt 387  Q
    | |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44817097 agccgtttgaggctggatcacaatggcctgcaaggtttagagttggattttggccattgccaaaagtggatagaaaagctatgtttacaaatttgtagtt 44816998  T
Q  388 gtctgtg 394  Q
    || ||||    
T  44816997 gtttgtg 44816991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 44838126 - 44838060
Alignment:
Q  92 attccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccata 158  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  44838126 attccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccata 44838060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 44849210 - 44849147
Alignment:
Q  95 ccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccata 158  Q
    ||||| || ||||||||||| || ||||||||| |||||||||||||||||||| |||||||||    
T  44849210 ccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata 44849147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 17571007 - 17571175
Alignment:
Q  88 atcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacctgcgtggcatcatca 187  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||  || | |    
T  17571007 atcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgcgtggtgtcgtaa 17571106  T
Q  188 gctgaggaaagagagtagcttccggcaccacctcctagagatagcaacactttgatgcctttgctttga 256  Q
    |  |||   ||||||||||||||  | || ||| | | | | |||||||||||||||||||||||||||    
T  17571107 gacgagttgagagagtagcttccaacgccgccttcgataaagagcaacactttgatgcctttgctttga 17571175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 239 - 396
Target Start/End: Original strand, 23396549 - 23396704
Alignment:
Q  239 ttgatgcctttgctttgacaagtttgaatttcactactaaactttgtgcaaccgtttgaggctggatcacaatggccagcaaggtttagagttg-gagtt 337  Q
    |||||||||||||||||||||||||| || ||  ||||||| ||| |||| || |||| || ||||||||||||||| |||||||||  ||||| || ||    
T  23396549 ttgatgcctttgctttgacaagtttggatatctttactaaagtttctgcagccatttgtggatggatcacaatggcctgcaaggttt--agttgtgattt 23396646  T
Q  338 tggccattgccaaaagtggatagaaaagctatgtttacaaattggtagttgtctgtgct 396  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||    
T  23396647 tggccattgcc-aaagtggatagaaaagctatgtttataaattggtagttgtttgtgct 23396704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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