View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_21 (Length: 395)
Name: NF0486_low_21
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 10265853 - 10266209
Alignment:
| Q |
1 |
attattcctttctttttacaactaaaccacccc-catgaacaaaatttcattctctccatcatactacccaagtctgggatttggattcccttgtcattt |
99 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
10265853 |
attattcctttctttttacaactaaaccaccccccatgaacaaaattttattctctccatcatactacccaagtctgggatttggatcctcttgtcattt |
10265952 |
T |
|
| Q |
100 |
ctctcatgttattcgtgctgcactaagtcatgattattcctctccaatgcaacgctactttagttggtattttcttgtaaaagtttccaaccaaacacac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10265953 |
ctctcatgttattcgtgctgcactaagtcatgattattcctctccgatgcaacgccactttagttggtattttcttgtaaaagtttccaaccaaacacac |
10266052 |
T |
|
| Q |
200 |
cgattttcgagaaaacatatgaacaccatatcacatgaattgtctgcatgcaataaacaaagctcctttaggactcctgcacgagctgacaccatgtttt |
299 |
Q |
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|||||||||||||||||||||||| |||||||| |||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
10266053 |
cgattttcgagaaaacatatgaacgccatatcagatgaatcgtctgcatg-------caacgctcctttagaactcctgcacgagctgacaccatgtttt |
10266145 |
T |
|
| Q |
300 |
tctaagaggacagaactgaaaaacccttcactttcttggccgattatcccaggaagagaataat |
363 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10266146 |
tctaagaggacagaactgaaaaacccttcactttcttggccgattatcccaggaagagaataat |
10266209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 10284878 - 10285234
Alignment:
| Q |
1 |
attattcctttctttttacaactaaaccacccc-catgaacaaaatttcattctctccatcatactacccaagtctgggatttggattcccttgtcattt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||| |
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|
| T |
10284878 |
attattcctttctttttacaactaaaccaccccccatgaacaaaattttattctctccatcatactacccaagtctgggatttggatcctcttatcattt |
10284977 |
T |
|
| Q |
100 |
ctctcatgttattcgtgctgcactaagtcatgattattcctctccaatgcaacgctactttagttggtattttcttgtaaaagtttccaaccaaacacac |
199 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10284978 |
ctctcatgttattcgtgctgcattaagtcatgattattcctctccgatgcaacgccactttagttggtattttcttgtaaaagtttccaaccaaacacac |
10285077 |
T |
|
| Q |
200 |
cgattttcgagaaaacatatgaacaccatatcacatgaattgtctgcatgcaataaacaaagctcctttaggactcctgcacgagctgacaccatgtttt |
299 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
10285078 |
cgattttcgagaaaacatatgaacgccatatcagatgaatcgtctgcatg-------caacgctcctttagaactcctgcacgagctgacaccatgtttt |
10285170 |
T |
|
| Q |
300 |
tctaagaggacagaactgaaaaacccttcactttcttggccgattatcccaggaagagaataat |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10285171 |
tctaagaggacagaactgaaaaacccttcactttcttggccgattatcccaggaagagaataat |
10285234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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