View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0486_low_22 (Length: 378)

Name: NF0486_low_22
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0486_low_22
NF0486_low_22
[»] chr3 (6 HSPs)
chr3 (28-368)||(31779589-31779929)
chr3 (180-367)||(42250688-42250875)
chr3 (216-275)||(17119069-17119128)
chr3 (215-268)||(17637489-17637542)
chr3 (215-275)||(13291682-13291742)
chr3 (251-295)||(5798193-5798237)
[»] chr8 (6 HSPs)
chr8 (34-356)||(34062126-34062467)
chr8 (250-356)||(33925546-33925652)
chr8 (304-365)||(12012448-12012509)
chr8 (214-275)||(26576662-26576723)
chr8 (304-356)||(6589477-6589529)
chr8 (215-275)||(23584907-23584967)
[»] chr5 (5 HSPs)
chr5 (199-365)||(37390211-37390377)
chr5 (249-368)||(18325461-18325579)
chr5 (215-319)||(26013730-26013833)
chr5 (304-367)||(19903498-19903561)
chr5 (215-319)||(22826149-22826249)
[»] chr2 (2 HSPs)
chr2 (251-368)||(13112429-13112546)
chr2 (228-273)||(27765611-27765656)
[»] chr7 (6 HSPs)
chr7 (249-357)||(28981162-28981269)
chr7 (213-275)||(27707313-27707375)
chr7 (238-345)||(4450944-4451050)
chr7 (228-270)||(10677339-10677381)
chr7 (215-268)||(1783062-1783115)
chr7 (215-275)||(26822371-26822431)
[»] chr4 (7 HSPs)
chr4 (231-365)||(12236182-12236316)
chr4 (249-361)||(13977332-13977444)
chr4 (231-365)||(23865971-23866105)
chr4 (310-356)||(27940854-27940900)
chr4 (228-275)||(11419761-11419808)
chr4 (257-347)||(12191096-12191185)
chr4 (237-275)||(21809997-21810035)
[»] scaffold0217 (1 HSPs)
scaffold0217 (249-364)||(6909-7024)
[»] chr6 (3 HSPs)
chr6 (243-365)||(19691944-19692066)
chr6 (211-278)||(21747102-21747169)
chr6 (215-268)||(11703964-11704017)
[»] chr1 (9 HSPs)
chr1 (215-365)||(29076839-29076989)
chr1 (228-361)||(19960273-19960404)
chr1 (249-345)||(20619698-20619794)
chr1 (249-365)||(35896036-35896152)
chr1 (219-281)||(21721134-21721196)
chr1 (304-365)||(43282526-43282587)
chr1 (219-275)||(33438980-33439036)
chr1 (215-268)||(30805834-30805887)
chr1 (28-104)||(11105517-11105593)
[»] scaffold0329 (1 HSPs)
scaffold0329 (228-361)||(4286-4417)
[»] scaffold1190 (1 HSPs)
scaffold1190 (231-356)||(1226-1351)
[»] scaffold0514 (1 HSPs)
scaffold0514 (231-356)||(7200-7325)
[»] scaffold0088 (1 HSPs)
scaffold0088 (239-275)||(42180-42216)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 28 - 368
Target Start/End: Complemental strand, 31779929 - 31779589
Alignment:
Q  28 catttaagagcatctgaaatttgcaaaaagctgaagttttggaacaaactctgaagagtacaagcatctgaaggactcggactttgaaggtcagaagact 127  Q
    |||||||||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |    
T  31779929 catttaagagtatctgaaatttgcaagaagttgaagttctggaacaaactctgaagagtacaagaatctgaaggactcagactttgaaggtcagaagatt 31779830  T
Q  128 ctgaagaagtgaagcttctaaagactcagactatgaacctctgactgagtttgtcgtcttatgatggatgttcactatcacattttaatagtacaactta 227  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31779829 atgaagaagtgaagcttctaaagactcagactatgaacctctgactgattttgtcgtcttatgatggatgttcactatcacattttaatagtacaactta 31779730  T
Q  228 tcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgaccttt 327  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31779729 tcttcttccgatcacgtgcagaaacaaacaaagaacttcaaagacaaataaaataaaacggataattcctttaaatgcaaaggaatttcaaacgaccttt 31779630  T
Q  328 caacgacattaaccaaatcataaaacatttcaacgtctctg 368  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31779629 caacgacattaaccaaatcataaaacatttcaacgtctctg 31779589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 367
Target Start/End: Original strand, 42250688 - 42250875
Alignment:
Q  180 gtcgtcttatgatggatgttcactatcacattttaatagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaa 279  Q
    |||||||| ||||||| | ||||||||| |   || |||||||| || ||||||||  | | |||| ||||||||| ||||||||||||||||||||| |    
T  42250688 gtcgtcttctgatggaaggtcactatcagacactagtagtacaatttgtcttcttctcaccccgtgcaaaaacaaataaagaacttcaaagacaaatgga 42250787  T
Q  280 ataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaatcataaaacatttcaacgtctct 367  Q
    || |||| |||||||||  |  | |||||| |||||||||  |  ||||||||||||||||||||||| || ||||| ||||||||||    
T  42250788 atgaaacagataattccaattgaagcaaagaaatttcaaataatttttcaacgacattaaccaaatcaaaagacattccaacgtctct 42250875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 17119128 - 17119069
Alignment:
Q  216 tagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaa 275  Q
    |||||||| || |||||||| |||||||| || |||||||||||||||||||| ||||||    
T  17119128 tagtacaatttgtcttcttctgatcacgtatagaaacaaacaaagaacttcaaggacaaa 17119069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 17637489 - 17637542
Alignment:
Q  215 atagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaa 268  Q
    ||||||||| ||||||||||| || ||| |||| ||||||||||||||||||||    
T  17637489 atagtacaatttatcttcttctgaccacatgtagaaacaaacaaagaacttcaa 17637542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 13291682 - 13291742
Alignment:
Q  215 atagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaa 275  Q
    ||||||||| || |||||||| || |||||||| |||||||||||||||| ||| ||||||    
T  13291682 atagtacaatttgtcttcttctgaccacgtgtagaaacaaacaaagaactccaaggacaaa 13291742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 5798193 - 5798237
Alignment:
Q  251 acaaacaaagaacttcaaagacaaatgaaataaaacggataattc 295  Q
    ||||||||||||||||||||| ||||||||| ||| | |||||||    
T  5798193 acaaacaaagaacttcaaagataaatgaaatgaaatgaataattc 5798237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 356
Target Start/End: Original strand, 34062126 - 34062467
Alignment:
Q  34 agagcatctgaaatttgcaaaaagctgaagttttggaacaaactctgaagagtacaagcatctgaaggactcggactttgaaggtcagaagactctgaag 133  Q
    ||||||| ||||||  || | ||| ||||||| || |||| |||||||||||||||||||| ||||||||||||||| | |||  ||||||||||||| |    
T  34062126 agagcatttgaaatccgcgagaagttgaagttctgaaacagactctgaagagtacaagcatttgaaggactcggactctaaagaccagaagactctgatg 34062225  T
Q  134 aagtgaagcttctaaagactcagactatgaa--------------------cctctgactgagtttgtcgtcttatgatggatgttcactatcacatttt 213  Q
    |||||||||||||||||||||||||| | ||                    ||| ||||||  ||||| |||||||||||||   ||||| ||| | | |    
T  34062226 aagtgaagcttctaaagactcagactctaaaggccacgtcggcatcagaagcctttgactggttttgtagtcttatgatggaatatcactgtcaaactct 34062325  T
Q  214 aatagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaat 313  Q
    |||||||||| || |||||||  || |||||| | |||||||||||||||||||||| ||  || ||| ||||  ||||||| ||| || |||||  |||    
T  34062326 aatagtacaatttgtcttcttgtgaccacgtgcagaaacaaacaaagaacttcaaaggcagttggaatgaaacaaataattcttttgaa-gcaaataaat 34062424  T
Q  314 ttcaaacgacctttcaacgacattaaccaaatcataaaacatt 356  Q
    |||||| ||||||| || ||||||||||||||||  |||||||    
T  34062425 ttcaaatgaccttttaaagacattaaccaaatcaagaaacatt 34062467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 33925546 - 33925652
Alignment:
Q  250 aacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaatcata 349  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||| |||  | |||||| |||||||||   | |||||||||||||||||||||||      
T  33925546 aacaaacaaagaacttcaaagacaaatgaaatgaaatggataattcattttgaagcaaagaaatttcaaatatcttttcaacgacattaaccaaatcaag 33925645  T
Q  350 aaacatt 356  Q
    |||||||    
T  33925646 aaacatt 33925652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 12012448 - 12012509
Alignment:
Q  304 gcaaaggaatttcaaacgacctttcaacgacattaaccaaatcataaaacatttcaacgtct 365  Q
    |||||||||||||||| |||||||||| | ||||||||||||||   |||||| ||||||||    
T  12012448 gcaaaggaatttcaaatgacctttcaatggcattaaccaaatcaagcaacattccaacgtct 12012509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 26576723 - 26576662
Alignment:
Q  214 aatagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaa 275  Q
    |||||||||| || ||||||||  ||| |||| | | |||||||||||||||||||||||||    
T  26576723 aatagtacaatttttcttcttctaatctcgtgcagatacaaacaaagaacttcaaagacaaa 26576662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 6589477 - 6589529
Alignment:
Q  304 gcaaaggaatttcaaacgacctttcaacgacattaaccaaatcataaaacatt 356  Q
    ||||||||||||| || ||||||||||||| |||| ||||||||  |||||||    
T  6589477 gcaaaggaatttcgaatgacctttcaacgatattatccaaatcaagaaacatt 6589529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 23584907 - 23584967
Alignment:
Q  215 atagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaa 275  Q
    ||||||||  || |||| ||| || |||||||| |||||||||||||||||||| ||||||    
T  23584907 atagtacactttgtcttattctgaccacgtgtataaacaaacaaagaacttcaaggacaaa 23584967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 365
Target Start/End: Complemental strand, 37390377 - 37390211
Alignment:
Q  199 tcactatcacattttaatagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctt 298  Q
    ||||||||| | ||| ||||||||  ||||||||||| || ||| || | |||||||||||||||||||| || || || ||| |||| |||||||||||    
T  37390377 tcactatcagactttgatagtacattttatcttcttctgaccacatgcagaaacaaacaaagaacttcaaggataattggaatgaaacagataattcctt 37390278  T
Q  299 taaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaatcataaaacatttcaacgtct 365  Q
    |  | |||||||||||||||| | | ||||||||| ||||||| ||||   ||||||| ||||||||    
T  37390277 ttcaagcaaaggaatttcaaatgtcttttcaacgatattaaccgaatcgagaaacattccaacgtct 37390211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 368
Target Start/End: Original strand, 18325461 - 18325579
Alignment:
Q  249 aaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaatcat 348  Q
    |||||||||||||||||||  ||||| || ||| ||||  |||||||||||  | ||||||||||| |||| || |||||||| |||||||||| | ||     
T  18325461 aaacaaacaaagaacttcagggacaattggaatgaaacacataattccttttgaagcaaaggaattccaaaagaactttcaacaacattaaccatacca- 18325559  T
Q  349 aaaacatttcaacgtctctg 368  Q
    | |||||| |||||||||||    
T  18325560 agaacattccaacgtctctg 18325579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 26013833 - 26013730
Alignment:
Q  215 atagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatt 314  Q
    ||||||||| || |||||||| || || ||||| |||||||||||||||||||| || ||| || |  ||||||||||||||| |   ||||||||||||    
T  26013833 atagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaagaacttcaagga-aaaagagaacaaacggataattcctgtttctgcaaaggaatt 26013735  T
Q  315 tcaaa 319  Q
    |||||    
T  26013734 tcaaa 26013730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 367
Target Start/End: Complemental strand, 19903561 - 19903498
Alignment:
Q  304 gcaaaggaatttcaaacgacctttcaacgacattaaccaaatcataaaacatttcaacgtctct 367  Q
    |||||||||||||||| || ||||||| ||||||||||||||||  ||||||| | ||||||||    
T  19903561 gcaaaggaatttcaaatgaactttcaatgacattaaccaaatcaataaacattcccacgtctct 19903498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 22826249 - 22826149
Alignment:
Q  215 atagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatt 314  Q
    ||||||||  ||||||||||| || |||||||| ||||||||||| || ||||| |||||||  |||  |||||||||||||||    ||||||||||||    
T  22826249 atagtacagtttatcttcttctgaccacgtgtagaaacaaacaaaaaaattcaaggacaaatagaat-gaacggataattcctt---ctgcaaaggaatt 22826154  T
Q  315 tcaaa 319  Q
    |||||    
T  22826153 tcaaa 22826149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 13112429 - 13112546
Alignment:
Q  251 acaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaatcataa 350  Q
    ||||||||||||||| || ||||| ||||||||||||| ||||||||||  | ||||| ||| ||  || ||| ||||||||||||||||||||||| ||    
T  13112429 acaaacaaagaactttaacgacaattgaaataaaacgggtaattccttttgaagcaaatgaactttgaatgacatttcaacgacattaaccaaatcaaaa 13112528  T
Q  351 aacatttcaacgtctctg 368  Q
    || ||| |||||||||||    
T  13112529 aatattccaacgtctctg 13112546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 27765611 - 27765656
Alignment:
Q  228 tcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagaca 273  Q
    |||||||| || |||||||| |||||||||||||||||||| ||||    
T  27765611 tcttcttctgaccacgtgtagaaacaaacaaagaacttcaaggaca 27765656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 28981269 - 28981162
Alignment:
Q  249 aaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaatcat 348  Q
    |||||||||||||||||||||||||| || ||| || ||||||||| ||||  | |||| || |||||||||||| |||||||||||||||||||||||     
T  28981269 aaacaaacaaagaacttcaaagacaattgtaatgaa-cggataatttcttttgaagcaaggggatttcaaacgacttttcaacgacattaaccaaatcaa 28981171  T
Q  349 aaaacattt 357  Q
     ||||||||    
T  28981170 gaaacattt 28981162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 27707313 - 27707375
Alignment:
Q  213 taatagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaa 275  Q
    ||||||||||| || || ||||| || ||| |||| |||||||||||||||||||||||||||    
T  27707313 taatagtacaatttgtcctcttctgaccacatgtagaaacaaacaaagaacttcaaagacaaa 27707375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 345
Target Start/End: Complemental strand, 4451050 - 4450944
Alignment:
Q  238 atcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacatt 337  Q
    |||||||||| | ||||||||||||||||||  ||| ||| ||   |||||||||||||| |   ||||||||||||||||| | | ||||||||| |||    
T  4451050 atcacgtgtagatacaaacaaagaacttcaacaacagatggaa-cgaacggataattcctctttctgcaaaggaatttcaaatgtcttttcaacgatatt 4450952  T
Q  338 aaccaaat 345  Q
    | ||||||    
T  4450951 atccaaat 4450944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 10677381 - 10677339
Alignment:
Q  228 tcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaag 270  Q
    ||||||||||| |||||| |||||||||||||||| |||||||    
T  10677381 tcttcttccgaccacgtgcaaaaacaaacaaagaatttcaaag 10677339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 1783115 - 1783062
Alignment:
Q  215 atagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaa 268  Q
    ||||||||| || || ||||| || |||||||||||| ||||||||||||||||    
T  1783115 atagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaa 1783062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 26822431 - 26822371
Alignment:
Q  215 atagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaa 275  Q
    ||||||||| |||||||||||  |  | ||||| |||||||||||||||||||| ||||||    
T  26822431 atagtacaatttatcttcttctcactatgtgtagaaacaaacaaagaacttcaaggacaaa 26822371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 12236316 - 12236182
Alignment:
Q  231 tcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaa 330  Q
    ||||| ||||| ||| | ||||| || ||||||||||| ||||| |||||| |||||||||||||||||  | ||||| |||||| ||| | | ||||||    
T  12236316 tcttctgatcatgtgaagaaacatacgaagaacttcaaggacaattgaaatgaaacggataattccttttgaagcaaaagaattttaaatgtcttttcaa 12236217  T
Q  331 cgacattaaccaaatcataaaacatttcaacgtct 365  Q
    ||||||||||||| |||  |||||||| |||||||    
T  12236216 cgacattaaccaactcaagaaacatttgaacgtct 12236182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 361
Target Start/End: Original strand, 13977332 - 13977444
Alignment:
Q  249 aaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaatcat 348  Q
    |||||||||||||||||||||||||| |  ||| ||||  ||||||| |||  | |||||||||||||||| ||||||||||||| | |||||| ||||     
T  13977332 aaacaaacaaagaacttcaaagacaattagaattaaacaaataattctttttgaagcaaaggaatttcaaatgacctttcaacgataataaccatatcaa 13977431  T
Q  349 aaaacatttcaac 361  Q
     ||||||| ||||    
T  13977432 gaaacattccaac 13977444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 23866105 - 23865971
Alignment:
Q  231 tcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaa 330  Q
    ||||| ||||| ||| | |||||||||||||||||||| ||||| || ||| ||||| |||||||||||  | |||||||||||| ||| ||| ||  ||    
T  23866105 tcttctgatcatgtgcataaacaaacaaagaacttcaaggacaattggaatgaaacgaataattccttttgaagcaaaggaattttaaatgacattcaaa 23866006  T
Q  331 cgacattaaccaaatcataaaacatttcaacgtct 365  Q
    ||||||||| || ||||  ||||||| || |||||    
T  23866005 cgacattaatcatatcaagaaacattccaccgtct 23865971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 27940900 - 27940854
Alignment:
Q  310 gaatttcaaacgacctttcaacgacattaaccaaatcataaaacatt 356  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  27940900 gaatttcaaacgacctttcaacgacattaaccaaatcaagaaacatt 27940854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 11419808 - 11419761
Alignment:
Q  228 tcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaa 275  Q
    |||||||| || |||||||| |||||||||||||||||||| ||||||    
T  11419808 tcttcttctgaccacgtgtagaaacaaacaaagaacttcaaggacaaa 11419761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 347
Target Start/End: Complemental strand, 12191185 - 12191096
Alignment:
Q  257 aaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaatca 347  Q
    |||||||||||||||||| || | | || | ||||||||||||  | |||||||||||||||| | | || |||| |||||||||||||||    
T  12191185 aaagaacttcaaagacaattggattgaa-cagataattccttttgaagcaaaggaatttcaaatgtcgttccaacaacattaaccaaatca 12191096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 21809997 - 21810035
Alignment:
Q  237 gatcacgtgtaaaaacaaacaaagaacttcaaagacaaa 275  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  21809997 gatcacgtgtaaaaacaaacaaataacttcaaggacaaa 21810035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 364
Target Start/End: Original strand, 6909 - 7024
Alignment:
Q  249 aaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaatcat 348  Q
    ||||||||||||||| | || ||||| || ||| |||| ||||||||||||  | |||||| |||||||||   | |||||||||||||||||||||||     
T  6909 aaacaaacaaagaacattaaggacaattggaatgaaacagataattccttttgaagcaaagaaatttcaaatatcttttcaacgacattaaccaaatcaa 7008  T
Q  349 aaaacatttcaacgtc 364  Q
     |||||||||||||||    
T  7009 gaaacatttcaacgtc 7024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 243 - 365
Target Start/End: Original strand, 19691944 - 19692066
Alignment:
Q  243 gtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaacca 342  Q
    ||||| ||||||||||||| |||||| ||||| |||||| ||||| ||||||   ||  | ||||||||||||| || || |||||||||||||||||||    
T  19691944 gtgtagaaacaaacaaagagcttcaaggacaattgaaatgaaacgaataatttaatttgaagcaaaggaatttcgaatgagctttcaacgacattaacca 19692043  T
Q  343 aatcataaaacatttcaacgtct 365  Q
    |||||  ||||||| ||| ||||    
T  19692044 aatcaagaaacattccaatgtct 19692066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 21747169 - 21747102
Alignment:
Q  211 tttaatagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatga 278  Q
    ||||||||| ||| ||||||||||| || |||||| | | ||||||||||||||||||||||||||||    
T  21747169 tttaatagttcaatttatcttcttctgaccacgtgcagatacaaacaaagaacttcaaagacaaatga 21747102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 11703964 - 11704017
Alignment:
Q  215 atagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaa 268  Q
    ||||||||  || ||||||||||| ||| |||| ||||||||||||||||||||    
T  11703964 atagtacagtttctcttcttccgagcacatgtataaacaaacaaagaacttcaa 11704017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 365
Target Start/End: Original strand, 29076839 - 29076989
Alignment:
Q  215 atagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatt 314  Q
    |||||| || |||||||||||  | |||||| | |||||||||||  | ||||| |||||||||||| ||||| |||||| | ||  | ||||| |||||    
T  29076839 atagtataatttatcttcttctaaacacgtgcagaaacaaacaaaacaattcaaggacaaatgaaatgaaacgaataatttcatttgaagcaaatgaatt 29076938  T
Q  315 tcaaacgacctttcaacgacattaaccaaatcataaaacatttcaacgtct 365  Q
    ||||| ||| |||||||  ||||||||||||||  ||||||| ||||||||    
T  29076939 tcaaatgacatttcaacatcattaaccaaatcaagaaacattccaacgtct 29076989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 361
Target Start/End: Original strand, 19960273 - 19960404
Alignment:
Q  228 tcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgaccttt 327  Q
    |||||||| || |||||| ||||||| |||| ||||||||||||||| || ||| || |  ||||||| |||  | |||||||||||||||| | | |||    
T  19960273 tcttcttctgaccacgtgcaaaaacatacaa-gaacttcaaagacaattggaatgaa-caaataattctttttgaagcaaaggaatttcaaatgtctttt 19960370  T
Q  328 caacgacattaaccaaatcataaaacatttcaac 361  Q
    ||||||||||||||||||||| ||||||| ||||    
T  19960371 caacgacattaaccaaatcatgaaacattccaac 19960404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 345
Target Start/End: Complemental strand, 20619794 - 20619698
Alignment:
Q  249 aaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaat 345  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||   ||  |   ||| |||||| ||| |||||||||| ||||||||||||||    
T  20619794 aaacaaacaaagaacttcaaagacaattgaaataaaacagataatttaatttgaaaaaaatgaatttaaaatgacctttcaatgacattaaccaaat 20619698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 365
Target Start/End: Complemental strand, 35896152 - 35896036
Alignment:
Q  249 aaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaaccaaatcat 348  Q
    ||||||| ||||||||| || || ||  | ||| ||| |||||||||||||  | ||||| ||||||||||   | |||||| ||||||||||||||||     
T  35896152 aaacaaataaagaactttaaggaaaatcggaatgaaatggataattccttttgaagcaaatgaatttcaaatttcttttcaaagacattaaccaaatcaa 35896053  T
Q  349 aaaacatttcaacgtct 365  Q
    |||||||| ||||||||    
T  35896052 aaaacattccaacgtct 35896036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 21721134 - 21721196
Alignment:
Q  219 tacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaat 281  Q
    ||||| || |||||||| ||||| ||||||| |||||||||||||||||| |||| |||||||    
T  21721134 tacaatttgtcttcttctgatcatgtgtaaatacaaacaaagaacttcaaggacatatgaaat 21721196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 43282526 - 43282587
Alignment:
Q  304 gcaaaggaatttcaaacgacctttcaacgacattaaccaaatcataaaacatttcaacgtct 365  Q
    |||||||||||||||| |  | ||||||||| |||||||||||| | |||||||||||||||    
T  43282526 gcaaaggaatttcaaatgtgccttcaacgacgttaaccaaatcaaagaacatttcaacgtct 43282587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 33439036 - 33438980
Alignment:
Q  219 tacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaa 275  Q
    ||||| ||||||||||| || |||||||| || ||||||||||||||||| ||||||    
T  33439036 tacaatttatcttcttctgaccacgtgtataagcaaacaaagaacttcaaggacaaa 33438980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 30805834 - 30805887
Alignment:
Q  215 atagtacaacttatcttcttccgatcacgtgtaaaaacaaacaaagaacttcaa 268  Q
    ||||||||| || |||||||| |  |||||||| ||||||||||||||||||||    
T  30805834 atagtacaatttgtcttcttctggccacgtgtagaaacaaacaaagaacttcaa 30805887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 11105593 - 11105517
Alignment:
Q  28 catttaagagcatctgaaatttgcaaaaagctgaagttttggaacaaactctgaagagtacaagcatctgaaggact 104  Q
    ||||||||||| ||| |||||||  | ||||||||| ||||||||| ||| | || || || |||||||||||||||    
T  11105593 catttaagagcgtctcaaatttgtgagaagctgaagctttggaacagacttttaatagcacgagcatctgaaggact 11105517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 361
Target Start/End: Complemental strand, 4417 - 4286
Alignment:
Q  228 tcttcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgaccttt 327  Q
    |||||||| ||||||||| | | |||||||| ||||||||| |||||||| ||| || |||||||||||||      ||||||||||||||| ||| |||    
T  4417 tcttcttctgatcacgtgcagatacaaacaa-gaacttcaaggacaaatggaatgaa-cggataattccttgttcaacaaaggaatttcaaatgactttt 4320  T
Q  328 caacgacattaaccaaatcataaaacatttcaac 361  Q
    ||||||||||||||||||||  ||||||| ||||    
T  4319 caacgacattaaccaaatcaagaaacattccaac 4286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 1351 - 1226
Alignment:
Q  231 tcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaa 330  Q
    ||||| || |||||| | |||||||||||||||||||| ||||| || ||| || || |||||| | ||  | ||||||||||||  || ||||||||||    
T  1351 tcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaatcgaataatttcatttgaagcaaaggaattttgaatgacctttcaa 1252  T
Q  331 cgacattaaccaaatcataaaacatt 356  Q
    ||| |||| ||||||||  |||||||    
T  1251 cgatattatccaaatcaagaaacatt 1226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 7325 - 7200
Alignment:
Q  231 tcttccgatcacgtgtaaaaacaaacaaagaacttcaaagacaaatgaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaa 330  Q
    ||||| || |||||| | |||||||||||||||||||| ||||| || ||| || || |||||| | ||  | ||||||||||||  || ||||||||||    
T  7325 tcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaatcgaataatttcatttgaagcaaaggaattttgaatgacctttcaa 7226  T
Q  331 cgacattaaccaaatcataaaacatt 356  Q
    ||| |||| ||||||||  |||||||    
T  7225 cgatattatccaaatcaagaaacatt 7200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 42180 - 42216
Alignment:
Q  239 tcacgtgtaaaaacaaacaaagaacttcaaagacaaa 275  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  42180 tcacgtgtagaaacaaacaaagaacttcaaggacaaa 42216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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