View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_29 (Length: 325)
Name: NF0486_low_29
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 88 - 252
Target Start/End: Complemental strand, 44834654 - 44834490
Alignment:
| Q |
88 |
atcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacctgcgtggcatcatca |
187 |
Q |
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| T |
44834654 |
atcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacctgcgtggcatcatca |
44834555 |
T |
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| Q |
188 |
gctgaggaaagagagtagcttccggcaccacctcctagagatagcaacactttgatgcctatgct |
252 |
Q |
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| T |
44834554 |
gctgaggaaagagagtagcttccggcaccacctccgagagatagcaacactttgatgcctttgct |
44834490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 88 - 252
Target Start/End: Complemental strand, 44817297 - 44817133
Alignment:
| Q |
88 |
atcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacctgcgtggcatcatca |
187 |
Q |
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| T |
44817297 |
atcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcgtaa |
44817198 |
T |
|
| Q |
188 |
gctgaggaaagagagtagcttccggcaccacctcctagagatagcaacactttgatgcctatgct |
252 |
Q |
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| T |
44817197 |
gacgagtagagagagtagcttccagtgccacctccgatagagagcaacactttgatgcctttgct |
44817133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 44838126 - 44838060
Alignment:
| Q |
92 |
attccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccata |
158 |
Q |
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| T |
44838126 |
attccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccata |
44838060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 44849210 - 44849147
Alignment:
| Q |
95 |
ccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccata |
158 |
Q |
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||||| || ||||||||||| || ||||||||| |||||||||||||||||||| ||||||||| |
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| T |
44849210 |
ccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
44849147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 17571007 - 17571098
Alignment:
| Q |
88 |
atcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacctgcgtgg |
179 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
17571007 |
atcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgcgtgg |
17571098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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