View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0486_low_34 (Length: 299)

Name: NF0486_low_34
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0486_low_34
NF0486_low_34
[»] chr7 (3 HSPs)
chr7 (113-240)||(1608831-1608960)
chr7 (121-220)||(2187860-2187960)
chr7 (113-220)||(19632944-19633053)
[»] chr5 (3 HSPs)
chr5 (113-220)||(37806540-37806650)
chr5 (157-220)||(37627431-37627495)
chr5 (126-205)||(33614707-33614785)
[»] chr8 (4 HSPs)
chr8 (121-220)||(29822632-29822733)
chr8 (166-220)||(7094160-7094216)
chr8 (166-220)||(7097893-7097949)
chr8 (166-205)||(45463058-45463097)
[»] chr1 (1 HSPs)
chr1 (121-240)||(41313953-41314075)
[»] chr2 (2 HSPs)
chr2 (166-240)||(19215544-19215620)
chr2 (172-227)||(19589281-19589337)
[»] chr4 (2 HSPs)
chr4 (126-201)||(637728-637803)
chr4 (183-225)||(11992147-11992190)
[»] chr3 (1 HSPs)
chr3 (172-220)||(8377591-8377641)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 113 - 240
Target Start/End: Complemental strand, 1608960 - 1608831
Alignment:
Q  113 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatata 210  Q
    |||||||| |||||||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1608960 caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaaggaaaagggcgctccattttttattttatata 1608861  T
Q  211 tgtatttactggttgattgaatgatgatgt 240  Q
    ||||||||||||||| || || ||||||||    
T  1608860 tgtatttactggttgtttaaaggatgatgt 1608831  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 2187860 - 2187960
Alignment:
Q  121 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatatatgtatttac 219  Q
    |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  2187860 attcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttac 2187959  T
Q  220 t 220  Q
    |    
T  2187960 t 2187960  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 19633053 - 19632944
Alignment:
Q  113 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatata 210  Q
    |||||||| |||||||||||||||||||| ||||| | || ||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  19633053 caagtgtagattcagtggagcaaagaccatgagtataaatattaatagctgctatattgttaaggtaagggaaagggcgctccattttttattttatata 19632954  T
Q  211 tgtatttact 220  Q
    ||||||||||    
T  19632953 tgtatttact 19632944  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 37806650 - 37806540
Alignment:
Q  113 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt--atttatat 209  Q
    |||||||| |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||   |||||||    
T  37806650 caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatat 37806551  T
Q  210 atgtatttact 220  Q
    |||||||||||    
T  37806550 atgtatttact 37806540  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 37627495 - 37627431
Alignment:
Q  157 tagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatatatgtatttact 220  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  37627495 tagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttact 37627431  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 33614785 - 33614707
Alignment:
Q  126 gtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccattttttattt 205  Q
    ||||||||||||||| | || || |||||| ||||  |||| | |||||||||||||||||||| ||||||| |||||||    
T  33614785 gtggagcaaagaccatgggttgaaatcttaatagcgactatct-gctaaggtaaggaaaagggcactccattatttattt 33614707  T

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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 29822632 - 29822733
Alignment:
Q  121 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtattta 218  Q
    ||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  29822632 attcagtggagcaaataccacgagttgaaatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatatatgtattta 29822731  T
Q  219 ct 220  Q
    ||    
T  29822732 ct 29822733  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 7094216 - 7094160
Alignment:
Q  166 tattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 220  Q
    ||||| |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  7094216 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttact 7094160  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 7097949 - 7097893
Alignment:
Q  166 tattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 220  Q
    ||||| |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  7097949 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttact 7097893  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 45463097 - 45463058
Alignment:
Q  166 tattgctaaggtaaggaaaagggcgctccattttttattt 205  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  45463097 tattgctaaggtaagggaaagggcgctccattatttattt 45463058  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 41314075 - 41313953
Alignment:
Q  121 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt---atttatatatgtattt 217  Q
    |||| ||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| ||| |||||||||||||||    |||||||||||| ||    
T  41314075 attccgtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaatggcgctccattttttctattttatatatgtagtt 41313976  T
Q  218 actggttgattgaatgatgatgt 240  Q
    ||| |||| |  |||||||||||    
T  41313975 acttgttgttaaaatgatgatgt 41313953  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 19215544 - 19215620
Alignment:
Q  166 tattgctaaggtaaggaaaagggcgctccattttt-ta-tttatatatgtatttactggttgattgaatgatgatgt 240  Q
    ||||| |||||||||| |||||||||||||||||| || |||||||||||||||||| |||| |  |||||||||||    
T  19215544 tattgttaaggtaagggaaagggcgctccatttttctattttatatatgtatttacttgttgttaaaatgatgatgt 19215620  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 19589281 - 19589337
Alignment:
Q  172 taaggtaaggaaaagggcgctccatttttta-tttatatatgtatttactggttgat 227  Q
    |||||||||||||| ||||||||||| |||| ||| ||||||||| |||| ||||||    
T  19589281 taaggtaaggaaaatggcgctccattatttattttttatatgtatctacttgttgat 19589337  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 637728 - 637803
Alignment:
Q  126 gtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt 201  Q
    |||||||||||||||||||| || ||||||  |||||||   ||| |||||||||| |||| ||||||||| ||||    
T  637728 gtggagcaaagaccacgagttgaaatcttaacagctgctgctttgttaaggtaagggaaagtgcgctccatatttt 637803  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 11992190 - 11992147
Alignment:
Q  183 aaagggcgctccatttttta-tttatatatgtatttactggttg 225  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  11992190 aaagggcgctccattttttattttatatatgtatttacttgttg 11992147  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 8377591 - 8377641
Alignment:
Q  172 taaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 220  Q
    |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  8377591 taaggtaagggaaagggcgctccatttttttattttatatatgtatttact 8377641  T

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