View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_35 (Length: 298)
Name: NF0486_low_35
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 293
Target Start/End: Complemental strand, 3096819 - 3096557
Alignment:
| Q |
30 |
gaatttgattcattattttgaacttacataccacttgaacggggataatttgacattctctgtcacctgctcaacctccattgnnnnnnnnggagaaggt |
129 |
Q |
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| T |
3096819 |
gaatttgattcattattttgaacttacataccacttgaacggggataatttgacattctctgtcacctgctcaacctccattgttttttt-ggagaaggt |
3096721 |
T |
|
| Q |
130 |
aagataatttcgatacttccaaaagaaccacacaacatattgccacatcgaggtcaaacttatcttggtcttaactctatctcctagagatccaaaaata |
229 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3096720 |
aagataatttcgatacttccaaaagaaccacacgacatattgctacatcgaggtcaaacttatcttggtcttaactctatctcctagagatccaaaaata |
3096621 |
T |
|
| Q |
230 |
agaaaaaggatcatataagtaaaagcacaagtgacgaaaatgtgactcctcaattcatctcact |
293 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
3096620 |
agaaaaatgaccatataagtaaaagcacaagtgacgaaaatgtgactccccaattcaactcact |
3096557 |
T |
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