View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0486_low_36 (Length: 275)

Name: NF0486_low_36
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0486_low_36
NF0486_low_36
[»] scaffold0041 (2 HSPs)
scaffold0041 (37-222)||(87596-87781)
scaffold0041 (37-222)||(95612-95797)
[»] chr7 (2 HSPs)
chr7 (37-222)||(40870485-40870670)
chr7 (37-222)||(40878502-40878687)
[»] chr4 (1 HSPs)
chr4 (50-104)||(21715642-21715696)
[»] chr2 (1 HSPs)
chr2 (39-104)||(40352712-40352777)
[»] chr1 (1 HSPs)
chr1 (39-103)||(42730140-42730204)


Alignment Details
Target: scaffold0041 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 87781 - 87596
Alignment:
Q  37 aatatctaggacaagaaaatccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgat 136  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87781 aatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgat 87682  T
Q  137 gccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87681 gccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcat 87596  T

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Target: scaffold0041; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 95797 - 95612
Alignment:
Q  37 aatatctaggacaagaaaatccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgat 136  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95797 aatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgat 95698  T
Q  137 gccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95697 gccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcat 95612  T

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Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 40870485 - 40870670
Alignment:
Q  37 aatatctaggacaagaaaatccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgat 136  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870485 aatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgat 40870584  T
Q  137 gccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870585 gccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcat 40870670  T

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Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 40878502 - 40878687
Alignment:
Q  37 aatatctaggacaagaaaatccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgat 136  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878502 aatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgat 40878601  T
Q  137 gccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878602 gccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcat 40878687  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
Q  50 agaaaatccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat 104  Q
    |||||| || ||||||||||||||||||||||| ||||| || || |||||||||    
T  21715696 agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat 21715642  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 40352712 - 40352777
Alignment:
Q  39 tatctaggacaagaaaatccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat 104  Q
    |||||||||  ||| || || |||||||||||||||||||| |||||||| || || |||||||||    
T  40352712 tatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat 40352777  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 42730204 - 42730140
Alignment:
Q  39 tatctaggacaagaaaatccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga 103  Q
    |||||||||  |||||| || ||||| |||||||||||||||||||| || || || ||||||||    
T  42730204 tatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaaaaga 42730140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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