View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_45 (Length: 251)
Name: NF0486_low_45
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_45 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 48710326 - 48710547
Alignment:
| Q |
30 |
cttatgttaatagatagttcaaataagtcaatccaagctgacccttgatgagctatcggaactgttatataaaattaatcttgaatcaatacaataatta |
129 |
Q |
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| T |
48710326 |
cttatgttaatagatagttcaaataagtcaatccaagctgacccttgatgagctatcggaactgttatataaaattaatcttgaatcaatacaataatta |
48710425 |
T |
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| Q |
130 |
ggagcttgatgttacaattatagatgatctcatgttgcttgggagttaatttcacagttgttcacaggggaaacttctggattagtaatttgcatgacat |
229 |
Q |
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| T |
48710426 |
ggagcttgatgttacaattatagatgatctcatgttgcttgggagttaatttcacagttgttcacaggggaaacttctggattagtaatttgcatgacat |
48710525 |
T |
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| Q |
230 |
ccatatctatgttttgactaaa |
251 |
Q |
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| T |
48710526 |
ccatatctatgttttgactaaa |
48710547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 48698929 - 48699052
Alignment:
| Q |
98 |
ataaaattaatcttgaatcaatacaataattaggagcttgatgttacaattatagatgatctcatgttgcttgggagttaatttcacagttgttcacagg |
197 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||| | || ||||||||||||||||||||| |
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| T |
48698929 |
ataatattaatcttgaatcaatacaattattaggagcttgatgttacaatcgtagatgatatcaagttgcttagaggtcaatttcacagttgttcacagg |
48699028 |
T |
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| Q |
198 |
ggaaacttctggattagtaatttg |
221 |
Q |
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| T |
48699029 |
ggaaacttcctgattagtaatttg |
48699052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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