View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_46 (Length: 251)
Name: NF0486_low_46
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_46 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 48710795 - 48710554
Alignment:
| Q |
9 |
agcacagacacatttggttaaacaataatccaagtaattcaatatggagacgaattgaagtcgtgtttaggatgtttgatcaaagagacatgagtagtca |
108 |
Q |
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| T |
48710795 |
agcacaaacacatttggttaaacaataatccaagtaattcaatatggagacgaattgaagtcgtgtttaggatgtttgatcaaagagacttgagtagtca |
48710696 |
T |
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| Q |
109 |
cacattcaagaaaacagaaaatataaatgaaagcagtaataatccttatcatcatgatgatttaggtgctgttgaggtctctccaggcacaccttatcca |
208 |
Q |
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| T |
48710695 |
cacattcaagaaaacagaaaatataaatgaaagcagtaataatccttatcatcatgatgatttaggtgctgttgaggtctctccaggcacaccttatcca |
48710596 |
T |
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| Q |
209 |
cctagtccatttagtcaaaactgaatcaaatgtttccttctat |
251 |
Q |
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| T |
48710595 |
cctagtccatttagtc-aaactgaatcaaatgtttccttctat |
48710554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 48699325 - 48699093
Alignment:
| Q |
11 |
cacagacacatttggttaaacaataatccaagtaattcaatatggagacgaattgaagtcgtgtttaggatgtttgatcaaagagacatgagtagtcaca |
110 |
Q |
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| T |
48699325 |
cacaaacacatttggctacccaatagtccaagtaattcaatatggagacgaattcgcgtcttggtaatgatatttgatcaaagagacttaaactctcaca |
48699226 |
T |
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| Q |
111 |
cattcaagaaaacagaaaatataaatgaaagcagtaataatccttatcatcatgatgatttaggtgctgttgaggtctctccaggcacaccttatccacc |
210 |
Q |
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| T |
48699225 |
cattcaagaagagtggaaataaacatgaaagcagtaatagtcct---catcatgatgatttcggtgcagttgaggcctctccaggtacacattgtccgcc |
48699129 |
T |
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| Q |
211 |
tagtccatttagtcaaaactgaatcaaatgtttcctt |
247 |
Q |
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| T |
48699128 |
tagtccatctagtc-aaactgaatcaaacgtttcctt |
48699093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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