View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_50 (Length: 246)
Name: NF0486_low_50
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_50 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 32244398 - 32244630
Alignment:
| Q |
14 |
agagtgtatctttgctggtatctttacatatggaatcatgactgccgttaaatgaatgagaccatatgtatatggcatgggcttgtcccatgcattctgc |
113 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| | |||||||||||||||| |
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| T |
32244398 |
agagtgtatatttgttggtatctttacatatggaatcatgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgcattctgc |
32244497 |
T |
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| Q |
114 |
gtcgattcattacatgttgatatcattacttctttttcactatactttattcatttacagttttcattaagccataaccgtgttgctcagactcaaatat |
213 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
32244498 |
gtcgattctttacatgttgatatcattacttctttttcactttacttaattcatttacagttttcattaagcagtaacagtgttgctcagactcaaatat |
32244597 |
T |
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| Q |
214 |
attgatgtatggagtaattaatgtagacattct |
246 |
Q |
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|| |||||||| ||| ||||| ||||| ||||| |
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| T |
32244598 |
atagatgtatgtagtgattaaagtagaaattct |
32244630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 32250107 - 32250339
Alignment:
| Q |
14 |
agagtgtatctttgctggtatctttacatatggaatcatgactgccgttaaatgaatgagaccatatgtatatggcatgggcttgtcccatgcattctgc |
113 |
Q |
| |
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|||| |||| |||| || |||||| |||||||||||| ||||||| ||||||||||||||| || || ||||||||||||| | |||||||||||||||| |
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| T |
32250107 |
agagggtatatttgttgctatcttcacatatggaatcctgactgcagttaaatgaatgagaacaaatatatatggcatgggatggtcccatgcattctgc |
32250206 |
T |
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| Q |
114 |
gtcgattcattacatgttgatatcattacttctttttcactatactttattcatttacagttttcattaagccataaccgtgttgctcagactcaaatat |
213 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
32250207 |
gtcgattctttacatgttgatatcattacttctttttcactctactttattcatttacagttttcattaagccgtaacagtgttgctcagactcaaatat |
32250306 |
T |
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| Q |
214 |
attgatgtatggagtaattaatgtagacattct |
246 |
Q |
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|| |||||||||||||||||| ||||| ||||| |
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| T |
32250307 |
atagatgtatggagtaattaaagtagaaattct |
32250339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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