View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0486_low_51 (Length: 244)

Name: NF0486_low_51
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0486_low_51
NF0486_low_51
[»] chr1 (6 HSPs)
chr1 (43-151)||(32244247-32244354)
chr1 (43-151)||(32254776-32254884)
chr1 (43-151)||(32249956-32250063)
chr1 (148-228)||(32254822-32254902)
chr1 (145-228)||(32244293-32244375)
chr1 (148-228)||(32250002-32250081)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 32244247 - 32244354
Alignment:
Q  43 ggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgcatgcctataa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |    
T  32244247 ggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgcatgcctatga 32244345  T
Q  143 attcttaat 151  Q
    |||||||||    
T  32244346 attcttaat 32244354  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 32254776 - 32254884
Alignment:
Q  43 ggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgcatgcctataa 142  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |    
T  32254776 ggagtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgctaagttcatgacattcttcaccatgcatgcctatga 32254875  T
Q  143 attcttaat 151  Q
    |||||||||    
T  32254876 attcttaat 32254884  T

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Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 32249956 - 32250063
Alignment:
Q  43 ggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgcatgcctataa 142  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |    
T  32249956 ggagtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgcatgcctatga 32250054  T
Q  143 attcttaat 151  Q
    |||||||||    
T  32250055 attcttaat 32250063  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 32254902 - 32254822
Alignment:
Q  148 taatgtgatgtgtaggaaattaagaatttataggcatgcgtgctgaagaatgtaaggaactcagaaacctacactgtgtga 228  Q
    |||||||||||||||||||||||||||| |||||||||| || |||||||||| | ||||| || ||||||||||||||||    
T  32254902 taatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtga 32254822  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 32244375 - 32244293
Alignment:
Q  145 tcttaatgtgatgtgtaggaaattaagaatttataggcatgcgtgctgaagaatgtaaggaactcagaaacctacactgtgtga 228  Q
    ||||||||||||||||||||||||||||||| |||||||||| || |||||||||| | ||||| || ||||||||||||||||    
T  32244375 tcttaatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaact-agcaacctacactgtgtga 32244293  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 32250081 - 32250002
Alignment:
Q  148 taatgtgatgtgtaggaaattaagaatttataggcatgcgtgctgaagaatgtaaggaactcagaaacctacactgtgtga 228  Q
    |||||||||||||||||||||||||||| |||||||||| || |||||||||| | ||||| || ||||||||||||||||    
T  32250081 taatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaact-agcaacctacactgtgtga 32250002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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