View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0486_low_52 (Length: 242)

Name: NF0486_low_52
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0486_low_52
NF0486_low_52
[»] chr3 (1 HSPs)
chr3 (21-242)||(1281165-1281386)
[»] chr6 (30 HSPs)
chr6 (21-242)||(4617073-4617294)
chr6 (21-242)||(4601840-4602061)
chr6 (21-239)||(4516372-4516590)
chr6 (54-239)||(4256474-4256660)
chr6 (37-239)||(4260017-4260219)
chr6 (21-242)||(4585687-4585908)
chr6 (21-239)||(4592282-4592500)
chr6 (21-239)||(4626002-4626220)
chr6 (21-239)||(4560557-4560775)
chr6 (21-242)||(4613578-4613799)
chr6 (57-238)||(4622229-4622410)
chr6 (54-241)||(3171825-3172012)
chr6 (21-242)||(4480744-4480965)
chr6 (106-239)||(4563847-4563980)
chr6 (79-239)||(4574417-4574577)
chr6 (21-239)||(4571023-4571241)
chr6 (106-242)||(4267026-4267162)
chr6 (106-242)||(4457730-4457866)
chr6 (106-242)||(4469939-4470075)
chr6 (106-242)||(4514981-4515117)
chr6 (85-239)||(4557240-4557394)
chr6 (109-239)||(4568195-4568325)
chr6 (106-242)||(4461259-4461395)
chr6 (54-242)||(4490215-4490403)
chr6 (79-242)||(4598280-4598443)
chr6 (31-239)||(4579493-4579701)
chr6 (136-242)||(4506023-4506129)
chr6 (106-177)||(4299671-4299742)
chr6 (152-242)||(4493137-4493227)
chr6 (21-242)||(4504257-4504478)
[»] chr8 (3 HSPs)
chr8 (21-242)||(1674277-1674498)
chr8 (79-239)||(16686130-16686290)
chr8 (106-242)||(20863703-20863839)
[»] chr5 (2 HSPs)
chr5 (21-242)||(27999959-28000180)
chr5 (106-242)||(24103135-24103271)
[»] scaffold0288 (1 HSPs)
scaffold0288 (24-239)||(3582-3797)
[»] chr7 (1 HSPs)
chr7 (79-242)||(3086529-3086692)
[»] scaffold0477 (1 HSPs)
scaffold0477 (37-242)||(4546-4751)
[»] scaffold0475 (1 HSPs)
scaffold0475 (128-239)||(3547-3658)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 1281165 - 1281386
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  1281165 acaaccacccggtctagtgttctcctccgccgccttcttcaattccatggccttttctctcatattctttccttcatccccggctatcaattcattgatc 1281264  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    | |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1281265 aacttagccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 1281364  T
Q  221 atggccaacacaacattggcac 242  Q
    ||||||||||||||||||||||    
T  1281365 atggccaacacaacattggcac 1281386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 4617073 - 4617294
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    ||||||||||||||||||||||||||| |||  ||||||||| ||||||||| |||   |||| |||||||||| ||||||| |||||| ||||||||||    
T  4617073 acaaccacctggtctagtgttctcctctgccttcttcttcaactccatggccttttgcttcattttctttcctttatctccggctatcacttcattgatc 4617172  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    |||||  ||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||    
T  4617173 agctttgccaactcctctctcttcacattcgtatcgatttccataccaatctcccattcattacaaataaatctacagtctgttggctggtcggcaaaaa 4617272  T
Q  221 atggccaacacaacattggcac 242  Q
    ||||||||||||||||||||||    
T  4617273 atggccaacacaacattggcac 4617294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 4601840 - 4602061
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    |||||||||| |||||||| ||||||  |||  ||||||||| ||||||||| |||  ||||| ||||| |||| ||||||| |||||| ||||||||||    
T  4601840 acaaccacctagtctagtgctctcctttgccatcttcttcaactccatggccttttgcctcatcttcttgcctttatctccggctatcacttcattgatc 4601939  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||    
T  4601940 agcttcgccaactcctctctcttcacatttgtatcgatttccataccaatctcccattcattacaaataaatctacagtttgttggctgatcggcaaaaa 4602039  T
Q  221 atggccaacacaacattggcac 242  Q
    | |||||||||||||| |||||    
T  4602040 aaggccaacacaacatcggcac 4602061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 4516372 - 4516590
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    ||||||||||||||| |||| |||||| |||  ||||||||||||||||||| |||  ||||| |||||||||| ||||||  | || ||||||||||||    
T  4516372 acaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatggccttttgcctcatcttctttcctttatctcccaccattaattcattgatc 4516471  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    |||||| |||||||||||||||||||||| ||||| |||||    ||||||| ||||||||| |||||| |||| || | ||||||||| ||||||||||    
T  4516472 agcttctccacctcctctctcttcacattggtatcaatttctgctccaatctcccattcattgcaaatatatctgcaatttgttggctgctcagcaaaaa 4516571  T
Q  221 atggccaacacaacattgg 239  Q
    | |||||||||||||||||    
T  4516572 aaggccaacacaacattgg 4516590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 4256660 - 4256474
Alignment:
Q  54 cttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgta 153  Q
    |||||||||||||||| || |||  ||||| ||||||||||  |||||    ||||||||||||||||| ||| ||||||| |||||||||||||| |||    
T  4256660 cttcttcaattccatgaccttttgcctcatcttctttcctttttctcccgacatcaattcattgatcagattctccacctcatctctcttcacattagta 4256561  T
Q  154 tcgatttccataccaatcttccattcattacaaataaatctacagtctgttgg-ctgatcagcaaaaaatggccaacacaacattgg 239  Q
    | |||||| || ||||||| ||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  4256560 ttgatttcaattccaatctcccattcgctacaaataaatctacagtttgttggtctgatcagcaaaaaatggccaacacaacattgg 4256474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 4260219 - 4260017
Alignment:
Q  37 gtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcct 136  Q
    ||||||||||| |||  | ||||||| |||||| || |||  ||||| ||||||||||| |||||    || | |||||||||||||||| ||||||| |    
T  4260219 gtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttccttcttctcctgacataatttcattgatcagcttcgccacctcat 4260120  T
Q  137 ctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacat 236  Q
    |||| |||||||| ||||  ||||| || ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4260119 ctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatggccaacacaacat 4260020  T
Q  237 tgg 239  Q
    |||    
T  4260019 tgg 4260017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 4585687 - 4585908
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    |||||| || ||||| |||| ||||||||||  ||||||||| || || ||| |||  ||||| |||||||| |  |||||  | ||||||||||||| |    
T  4585687 acaacctccaggtctcgtgtcctcctccgccttcttcttcaactcgattgccttttgcctcatcttctttccattctctcccaccatcaattcattgacc 4585786  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    | |||| |||||||||||||||||||||| || || | |||||| ||||||| ||||||||| ||||||| |||||||| |||||||||||||||||  |    
T  4585787 aacttctccacctcctctctcttcacattggtgtcaacttccatcccaatctcccattcattgcaaataattctacagtttgttggctgatcagcaatga 4585886  T
Q  221 atggccaacacaacattggcac 242  Q
    ||||||||||||||||||||||    
T  4585887 atggccaacacaacattggcac 4585908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 4592282 - 4592500
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    |||||| || ||||| ||||||||||| |||  ||||||||| || || ||| |||  ||||| ||||||||||  |||||  | ||||||||||||||     
T  4592282 acaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgata 4592381  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    || ||| |||||||||||||||| ||||| ||||| |||||||| ||||||| |||||||||  |||||| |||||||| |||||||||||||  ||| |    
T  4592382 agtttctccacctcctctctctttacattcgtatcaatttccatcccaatctcccattcattgtaaataagtctacagtttgttggctgatcactaaaga 4592481  T
Q  221 atggccaacacaacattgg 239  Q
    |||||||||||||||||||    
T  4592482 atggccaacacaacattgg 4592500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 4626002 - 4626220
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    ||||||||| || ||| |||||||||| |||  ||||||||| ||||||||| |||  ||||| |||||||| | ||||||  | |||||| ||||||||    
T  4626002 acaaccaccgggactaatgttctcctctgccttcttcttcaactccatggccttttgcctcatcttctttccgttatctcctgccatcaatgcattgatc 4626101  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    || ||| | ||| |||| ||||||||||| | |||||||||||| ||||||| ||||||||| |||||| ||||||| | |||||||||||||||||||     
T  4626102 agtttctctaccccctccctcttcacattagcatcgatttccattccaatctcccattcattgcaaatatatctacaatttgttggctgatcagcaaaat 4626201  T
Q  221 atggccaacacaacattgg 239  Q
     ||||||||||| ||||||    
T  4626202 ttggccaacacagcattgg 4626220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 4560557 - 4560775
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    |||||| || ||||| |||| | ||||||||   |||||||  ||||||||| |||  ||||| |||||||||| ||||| |   ||||||||||||| |    
T  4560557 acaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggccttttgcctcatcttctttcctttatctcaggacatcaattcattgacc 4560656  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    || ||| |||| ||||| ||||| ||||||||||| |||||  | ||||||||||||||||| |||||| |||| |||| || ||||||||| |||||||    
T  4560657 agtttctccacgtcctccctctttacatttgtatcaatttcgtttccaatcttccattcattgcaaatatatcttcagtttgctggctgatctgcaaaaa 4560756  T
Q  221 atggccaacacaacattgg 239  Q
    |||||||||||||||||||    
T  4560757 atggccaacacaacattgg 4560775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 4613799 - 4613578
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    |||||| |||||||| |||| |||||| |||  ||||||||| || || ||| |||  ||||| ||||||||||  |||||  | ||||||||||||| |    
T  4613799 acaacctcctggtctcgtgtcctcctctgccttcttcttcaactcaattgccttttgcctcattttctttcctttctctcccaccatcaattcattgacc 4613700  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    |||||| | ||||| |||||||||||||| || || |||||||| ||||| | ||||||||| || ||| |||| |||| || ||||||||| || ||||    
T  4613699 agcttctctacctcatctctcttcacattggtgtcaatttccatcccaatttcccattcattgcatatatatctgcagtttgctggctgatccgcgaaaa 4613600  T
Q  221 atggccaacacaacattggcac 242  Q
    ||||||||||||||||||||||    
T  4613599 atggccaacacaacattggcac 4613578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 4622229 - 4622410
Alignment:
Q  57 cttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcg 156  Q
    |||||| ||||||||| ||| |||||| |||||||||| ||||||    ||||||||||||||||| |||  |||||||||||| |||||||| |||| |    
T  4622229 cttcaactccatggccttttgtctcatcttctttcctttatctcccgacatcaattcattgatcagattcgacacctcctctcttttcacattagtattg 4622328  T
Q  157 atttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattg 238  Q
    ||||| || ||||||| ||||  ||| || ||| ||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  4622329 atttcgattccaatctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacacagcattg 4622410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 241
Target Start/End: Original strand, 3171825 - 3172012
Alignment:
Q  54 cttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgta 153  Q
    ||||||||| |||||||||||||  ||||| ||||||||||  |||||  | |||||||| |||||||| ||| | |||||| ||||||| ||||| |||    
T  3171825 cttcttcaactccatggccctttgcctcatcttctttcctttctctcccaccatcaattcgttgatcagtttctctacctcccctctctttacattggta 3171924  T
Q  154 tcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggca 241  Q
    || |||||||| |||||||||||||| |  ||||||| ||||| ||  | ||| ||||||||||||||||||| ||||||||||||||    
T  3171925 tcaatttccatcccaatcttccattcttggcaaataattctactgttaggtggttgatcagcaaaaaatggcctacacaacattggca 3172012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 4480744 - 4480965
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    ||||||||| ||||| |||| |||||| |||  ||||||||| ||||||||| |||   |||| ||||||||||  |||||  | | ||||||||||||     
T  4480744 acaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatggccttttgcttcatcttctttcctttctctcccaccaacaattcattgatt 4480843  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    | | || |||| || |||||||||||||| ||||||||||| |  ||||||| ||||||||| ||||||| ||||| ||  | ||||||||| ||||| |    
T  4480844 aacctctccacatcttctctcttcacattggtatcgatttcgagtccaatctcccattcattgcaaataattctacggttaggtggctgatcggcaaaga 4480943  T
Q  221 atggccaacacaacattggcac 242  Q
    ||||||||||||||||||||||    
T  4480944 atggccaacacaacattggcac 4480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 4563847 - 4563980
Alignment:
Q  106 atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg 205  Q
    |||||||||||||  || ||| ||||||| |||||||| ||||| |||||||||||||| ||||||| |||||||||  |||||| |||||||| |||||    
T  4563847 atcaattcattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaatctcccattcattgtaaataagtctacagtttgttg 4563946  T
Q  206 gctgatcagcaaaaaatggccaacacaacattgg 239  Q
    |||||||| |||| ||||||||||||||||||||    
T  4563947 gctgatcaccaaagaatggccaacacaacattgg 4563980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 239
Target Start/End: Original strand, 4574417 - 4574577
Alignment:
Q  79 ctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccatt 178  Q
    ||||| |||||||||| |||||||   ||||||||||||| ||| ||| |||||||||| ||||| ||||| |||||||||||| | ||||||| |||||    
T  4574417 ctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccatt 4574516  T
Q  179 cattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattgg 239  Q
    |||| |||||| |||| |||| || ||||||||| | ||||||||||||||| ||||||||    
T  4574517 cattgcaaatatatctgcagtttgctggctgatccgaaaaaaatggccaacataacattgg 4574577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 4571023 - 4571241
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    ||||||||| ||||| |||| ||||||||||  ||||||||  |||||     |||  ||||| |||||||||| ||||||  | ||||||||||||| |    
T  4571023 acaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccattatatttttcctcatcttctttcctttatctcccaccatcaattcattgacc 4571122  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    |  ||| ||||||| | |||||||||||| ||||||||||| || ||||||| ||||  ||| || ||| ||||||||| || |||||||||||||||||    
T  4571123 aaattctccacctcatttctcttcacattagtatcgatttcgattccaatctcccatgtattgcagatatatctacagtttgctggctgatcagcaaaaa 4571222  T
Q  221 atggccaacacaacattgg 239  Q
    ||||| |||||||||||||    
T  4571223 atggctaacacaacattgg 4571241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 242
Target Start/End: Complemental strand, 4267162 - 4267026
Alignment:
Q  106 atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg 205  Q
    |||||||||||||  | |||| | || || ||||||||||||||||||| |||||| |  ||||||| ||||||||  |||||||||||||||| |||||    
T  4267162 atcaattcattgactaacttctcgacgtcatctctcttcacatttgtattgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttg 4267063  T
Q  206 gctgatcagcaaaaaatggccaacacaacattggcac 242  Q
    |||||||| |||| |||||||||||||||||||||||    
T  4267062 gctgatcaccaaagaatggccaacacaacattggcac 4267026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 4457730 - 4457866
Alignment:
Q  106 atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg 205  Q
    |||||||||||||  | |||| ||||||| ||||||||||||||||||||||||||||| |||||||  |||||||| ||||||||||||||   |||||    
T  4457730 atcaattcattgactaacttctccacctcatctctcttcacatttgtatcgatttccatcccaatctctcattcattgcaaataaatctacaacttgttg 4457829  T
Q  206 gctgatcagcaaaaaatggccaacacaacattggcac 242  Q
    ||| |||| |||| |||||||||| || |||||||||    
T  4457830 gcttatcaccaaagaatggccaacgcagcattggcac 4457866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 4469939 - 4470075
Alignment:
Q  106 atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg 205  Q
    |||||||||||||  |||||| ||||||| ||||||||||||| | |||||||||| |  ||||||| ||||||||| |||||||||||||| | || |     
T  4469939 atcaattcattgactagcttctccacctcatctctcttcacatctttatcgatttcaagtccaatctcccattcattgcaaataaatctacaatttgcta 4470038  T
Q  206 gctgatcagcaaaaaatggccaacacaacattggcac 242  Q
    |||||||| |||| |||||||||||||||||||||||    
T  4470039 gctgatcaccaaagaatggccaacacaacattggcac 4470075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 242
Target Start/End: Complemental strand, 4515117 - 4514981
Alignment:
Q  106 atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg 205  Q
    |||||||||||||  |||||  | ||||||||||||||||||||  |||||||||| || ||||||| ||||||||| |||||||||||||||| |||||    
T  4515117 atcaattcattgacaagcttttcaacctcctctctcttcacattcatatcgatttcgatcccaatctcccattcattgcaaataaatctacagtttgttg 4515018  T
Q  206 gctgatcagcaaaaaatggccaacacaacattggcac 242  Q
    | |||||| |||| ||| ||||||| | |||||||||    
T  4515017 gttgatcaccaaagaattgccaacaaagcattggcac 4514981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 4557240 - 4557394
Alignment:
Q  85 ttctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattac 184  Q
    ||||||||||  || || || ||||||||||||| ||  ||| | ||||| |||||||||||||| || || |||||||| ||||||| ||||  ||| |    
T  4557240 ttctttcctttctccccctccatcaattcattgaccaaattctctacctcatctctcttcacattggtgtcaatttccatgccaatctcccatgtattgc 4557339  T
Q  185 aaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattgg 239  Q
    ||||| |||| |||| || ||||||||||||||||||||||||||||||||||||    
T  4557340 aaatatatctgcagtttgctggctgatcagcaaaaaatggccaacacaacattgg 4557394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 4568195 - 4568325
Alignment:
Q  109 aattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggct 208  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||| ||||| || || |||| | | | |||||||||| |||| |||| ||||||||    
T  4568195 aattcattcatcagcttctccacctcctctctcttcacatttgtatcaatttcgattccgatctccaacttattacaaatatatctgcagtatgttggct 4568294  T
Q  209 gatcagcaaaaaatggccaacacaacattgg 239  Q
    | |||| |||||| |||||||| ||||||||    
T  4568295 gctcagaaaaaaaaggccaacataacattgg 4568325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 4461259 - 4461395
Alignment:
Q  106 atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg 205  Q
    |||||||| |||| || |||| ||||||| || |||||||||| | |||||||||| |  ||||||| |||||  || |||||||||||||||| || ||    
T  4461259 atcaattcgttgaccaacttctccacctcatccctcttcacatctttatcgatttcaagtccaatctcccatttgttgcaaataaatctacagtttgctg 4461358  T
Q  206 gctgatcagcaaaaaatggccaacacaacattggcac 242  Q
    |||||||| |||| ||||||||||||||||| |||||    
T  4461359 gctgatcaccaaagaatggccaacacaacatcggcac 4461395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 4490403 - 4490215
Alignment:
Q  54 cttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgta 153  Q
    ||||||||| ||| | ||| |||  ||||| ||||||||||  |||||  | ||||||||||||||||| ||| | ||||| |||||||| ||||| |||    
T  4490403 cttcttcaactccgtcgccttttgcctcatcttctttcctttctctcccaccatcaattcattgatcagtttctctacctcttctctctttacattggta 4490304  T
Q  154 tcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcac 242  Q
    || |||| ||| ||||||| |||||| |  ||||||| ||||| |     ||| |||||||||||||||||||||||||||||||||||    
T  4490303 tcaattttcatcccaatctcccattcttcgcaaataattctactgctaagtggttgatcagcaaaaaatggccaacacaacattggcac 4490215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 4598280 - 4598443
Alignment:
Q  79 ctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccatt 178  Q
    ||||| |||||||||| ||||||    |||||||| |||| ||||||| |||||||||||||||||||||| || || ||||  || ||||||| |||||    
T  4598280 ctcattttctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacattagtttcaattttgattccaatctcccatt 4598379  T
Q  179 cattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcac 242  Q
    |||| |||||| |||| ||||  | | ||||||| || ||||| || |||||||||||||||||    
T  4598380 cattgcaaatatatctgcagttggcttgctgatccgcgaaaaagggacaacacaacattggcac 4598443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 239
Target Start/End: Original strand, 4579493 - 4579701
Alignment:
Q  31 ggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcacca 130  Q
    ||||| |||| ||||||| ||  ||||||||| || || ||| |||  ||||| |||||| |||  |||||  | ||||||||||| | ||||||| |||    
T  4579493 ggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcattaaccagcttctcca 4579592  T
Q  131 cctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaaca 230  Q
    ||||||||||||||||||| || |||||||| || ||||| ||||||  ||| || | | |||| |||  |  ||| |||||||| ||||||||||||||    
T  4579593 cctcctctctcttcacattagtgtcgatttcaattccaattttccatgtattgcataaatatctgcagcttactgggtgatcagcgaaaaatggccaaca 4579692  T
Q  231 caacattgg 239  Q
    |||||||||    
T  4579693 caacattgg 4579701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 4506023 - 4506129
Alignment:
Q  136 tctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaaca 235  Q
    ||||| |||||||| ||||| ||||| || ||||||| | ||||||| |||||||||||||||| |||||| |||||| |||| || |||||||||| ||    
T  4506023 tctctattcacattagtatcaatttcgattccaatctccaattcattgcaaataaatctacagtttgttggttgatcaccaaagaacggccaacacagca 4506122  T
Q  236 ttggcac 242  Q
    |||||||    
T  4506123 ttggcac 4506129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 4299742 - 4299671
Alignment:
Q  106 atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccat 177  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||| || ||||||| ||||    
T  4299742 atcaattcattgatcagcttttccacctcctctctcctcacatttgtatcgatttcgattccaatctcccat 4299671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 4493137 - 4493227
Alignment:
Q  152 tatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcac 242  Q
    |||||||||| |  ||||||| | ||||||| ||||| |||||||||| |||||||||||||  ||| || ||||||||||||||||||||    
T  4493137 tatcgatttctactccaatctccaattcattgcaaatcaatctacagtttgttggctgatcactaaagaaaggccaacacaacattggcac 4493227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 4504478 - 4504257
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    |||||||||  |||| |||| |||||| |||  ||||||||| ||||||||| |||  ||||| ||||||||||  |||||  | ||||||||||| ||     
T  4504478 acaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttttgcctcatcttctttcctttctctcccaccatcaattcattaata 4504379  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    || ||| | ||||| |||||||  ||||| | ||| || | ||| ||||||| |||||| |  |||||||   | |  |    ||||||||||| |||||    
T  4504378 agtttctctacctcttctctctgtacattggcatcaatcttcatcccaatctcccattcttcgcaaataatgttgctattaagtggctgatcagaaaaaa 4504279  T
Q  221 atggccaacacaacattggcac 242  Q
    ||||||||||||||||||||||    
T  4504278 atggccaacacaacattggcac 4504257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 1674277 - 1674498
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||||| |||  ||||| || ||||| |  |||||  | ||||||||||||||     
T  1674277 acaaccacctggtctagtgttctcctctgccttcttcttcaattccatggccttttgcctcatcttttttccattctctcccaccatcaattcattgata 1674376  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    |||||| |||   |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1674377 agcttctccaaaccctctctcttcacattcgtatcaatttccataccaatcttccattcattacaaataaatctacagtttgttggctgatcagcaaaaa 1674476  T
Q  221 atggccaacacaacattggcac 242  Q
    ||||||||||||||||||||||    
T  1674477 atggccaacacaacattggcac 1674498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 16686290 - 16686130
Alignment:
Q  79 ctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccatt 178  Q
    ||||| ||||||||||  |||||  | ||||||||||||| ||  ||| ||||||| |||||||||||||| || || |||||||| ||||||| |||||    
T  16686290 ctcatcttctttcctttctctcccaccatcaattcattgaccaatttctccacctcatctctcttcacattggtgtcaatttccatgccaatctcccatt 16686191  T
Q  179 cattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattgg 239  Q
    |||| |||||| |||| || | || ||||||||||||||||||||||||||||||||||||    
T  16686190 cattgcaaatatatctgcattttgctggctgatcagcaaaaaatggccaacacaacattgg 16686130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 242
Target Start/End: Complemental strand, 20863839 - 20863703
Alignment:
Q  106 atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg 205  Q
    ||||||||||| | |||| || |||||||||||||||| ||||| || || ||||| || ||||||| |||||  || |||||  |||| |||| ||| |    
T  20863839 atcaattcatttaccagcatctccacctcctctctcttgacattggtgtcaatttcgatcccaatctcccatttgttgcaaatgtatctgcagtttgtcg 20863740  T
Q  206 gctgatcagcaaaaaatggccaacacaacattggcac 242  Q
    |||||||||||||||||||||| ||||||||||||||    
T  20863739 gctgatcagcaaaaaatggccagcacaacattggcac 20863703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 28000180 - 27999959
Alignment:
Q  21 acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc 120  Q
    ||||||||||||||||||||||||||| |||   |||||||| ||||||||| |||  ||||| || ||||| |  |||||  | ||||||||||||||     
T  28000180 acaaccacctggtctagtgttctcctctgcctttttcttcaactccatggccttttgcctcatcttttttccattctctcccaccatcaattcattgata 28000081  T
Q  121 agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa 220  Q
    |||||| |||  |||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28000080 agcttctccaaatcctctatcttcacattcatatcaatttccataccaatcttccattcattacaaataaatctacagtttgttggctgatcagcaaaaa 27999981  T
Q  221 atggccaacacaacattggcac 242  Q
    ||| ||||||||||||||||||    
T  27999980 atgaccaacacaacattggcac 27999959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 24103135 - 24103271
Alignment:
Q  106 atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg 205  Q
    |||||||||||||  | |||| | || || |||||||||||||||||||||||||| |  ||||||| ||||||||  |||||||||||||||| |||||    
T  24103135 atcaattcattgactaacttctcgacgtcatctctcttcacatttgtatcgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttg 24103234  T
Q  206 gctgatcagcaaaaaatggccaacacaacattggcac 242  Q
    | |||||| |||| |||||||||||||||||||||||    
T  24103235 gttgatcaccaaagaatggccaacacaacattggcac 24103271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 3797 - 3582
Alignment:
Q  24 accacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagc 123  Q
    |||||||||||||||||||||||| |||  |||||| || |||| |||| |||  ||||| ||||||||||  |||||  |  ||||||||||||  |||    
T  3797 accacctggtctagtgttctcctctgccttcttctttaactccacggccttttgcctcatcttctttcctttctctcccaccgtcaattcattgactagc 3698  T
Q  124 ttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatg 223  Q
    ||| ||||||| |||||||||||||   |||||||||| |  ||||||| |||||| || |||||||||||||||| ||||||||||||| |||| ||||    
T  3697 ttctccacctcatctctcttcacatccatatcgatttcaagtccaatctcccattcgttgcaaataaatctacagtttgttggctgatcaccaaagaatg 3598  T
Q  224 gccaacacaacattgg 239  Q
    ||||||| | ||||||    
T  3597 gccaacaaagcattgg 3582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 3086529 - 3086692
Alignment:
Q  79 ctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccatt 178  Q
    ||||| |||||||||| ||||||  | ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| || ||||||| ||||     
T  3086529 ctcatcttctttcctttatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccata 3086628  T
Q  179 cattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcac 242  Q
     ||| || ||| ||||||||| | |||| |||||  || |||||||||||||||||||||||||    
T  3086629 tattgcagatatatctacagtttattggttgatctccataaaatggccaacacaacattggcac 3086692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 4751 - 4546
Alignment:
Q  37 gtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcct 136  Q
    ||||||||||| |||  ||||||||| ||||||||| |||  ||||| ||| |||||| ||||||    ||||||||||||||||  |||   |||| ||    
T  4751 gtgttctcctctgccttcttcttcaactccatggccttttgcctcatcttcattcctttatctcccgacatcaattcattgatcatattcgttaccttct 4652  T
Q  137 ctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacat 236  Q
    ||||||||||||| ||||| |||||||||||| ||| ||||  ||   | ||| | | | ||| |||||||||||| || ||||||||||||||||||||    
T  4651 ctctcttcacattagtatcaatttccataccagtctcccatatatgggagatataccgatagtttgttggctgatcggcgaaaaatggccaacacaacat 4552  T
Q  237 tggcac 242  Q
    ||||||    
T  4551 tggcac 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 3658 - 3547
Alignment:
Q  128 ccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggcca 227  Q
    |||||||||||||||||||||| | ||| |||||  | ||||||| ||||||||| |||||  ||||||||| |||||  || || |  |||||||||||    
T  3658 ccacctcctctctcttcacattggaatctatttcacttccaatctcccattcattccaaatgcatctacagtttgttgagtgttcggggaaaaatggcca 3559  T
Q  228 acacaacattgg 239  Q
    || || ||||||    
T  3558 acgcagcattgg 3547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 237 times since January 2019
Visitors: 3467