View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_56 (Length: 228)
Name: NF0486_low_56
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_56 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 39242124 - 39242342
Alignment:
| Q |
10 |
gtttcttattatataatagatatgctttattaaagatgagattttctaagtacattttctttctctaattgaacctagcatagcaggttcaatgatttat |
109 |
Q |
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| T |
39242124 |
gtttcttattatataatagatatgctttattaaagatgagattttctaagtacattttctttctctaattgaacctagcatagcaggttcaatgatttat |
39242223 |
T |
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| Q |
110 |
tctgcttcttatggttctatcaagcaataaattttctcattattttcctttaacagtgctatagggaagtgactaagggcatgtatggagatcttggcaa |
209 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39242224 |
tctgcttcttatgtttctatcaagcaataaattttctcattattttcctttaacagtgctatagggaagtgactaagggcatgtatggagatcttggcaa |
39242323 |
T |
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| Q |
210 |
agttatggaaggattcaac |
228 |
Q |
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| T |
39242324 |
agttatggaaggattcaac |
39242342 |
T |
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