View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0486_low_6 (Length: 652)
Name: NF0486_low_6
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 30 - 642
Target Start/End: Complemental strand, 32250717 - 32250104
Alignment:
| Q |
30 |
acaaaagggaattcaaacatgcactaaaaacactaaattgatttaaacatcaatggaaacaatcaacctgaattttctagaacttatttgaattcaaata |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
32250717 |
acaaaagggaattcaaacatgcactaaaaacactaaattgatttaaacatcaatggaaacaatcaacctgaattctctagaacttagttgaattcaaata |
32250618 |
T |
|
| Q |
130 |
actggaaggtaaatattgaactttcagagcataaattttaagagtttaagttacatatgctctgatggggtaannnnnnnnn--acaaatgcattcaatc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
32250617 |
actggaaggtaaatattgaactttcagagcataaattttaagagtttaagttacatatgctctgatggggtaattttcttttttacaaatgcatgcaatc |
32250518 |
T |
|
| Q |
228 |
aaaccatgtcatataatcatggtactttttataaggcagattttaaaacatttctataaataactatatttgacgtgatttgattggatgcatgagtaaa |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32250517 |
aaaccatgtcatataatcatggtactttt-ataaggtagattttaaaacatttatataaataactatatttgacgcgatttgattggatgcatgagtaac |
32250419 |
T |
|
| Q |
328 |
aatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgataataaccaagagaggtactataagctagaatttctactttaattact |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32250418 |
aatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgataataaccaagagaggtactataagctagaatttctactttaattact |
32250319 |
T |
|
| Q |
428 |
ccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaagaagtaatgatatcaacatg |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32250318 |
ccatacatctatatatttgagtctgagcaacactgttacggcttaatgaaaactgtaaatgaataaagtagagtgaaaaagaagtaatgatatcaacatg |
32250219 |
T |
|
| Q |
528 |
taaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatatgtaaagataccaaca |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
32250218 |
taaagaatcgacgcagaatgcatgggaccatcccatgccatatatatttgttctcattcatttaactgcagtcaggattccatatgtgaagatagcaaca |
32250119 |
T |
|
| Q |
628 |
aatatacactctgtg |
642 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
32250118 |
aatataccctctgtg |
32250104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 314 - 642
Target Start/End: Complemental strand, 32244723 - 32244395
Alignment:
| Q |
314 |
gatgcatgagtaaaaatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgataataaccaagagaggtactat-aagctagaatt |
412 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| | |||||||| || ||||||| ||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
32244723 |
gatgcatgagtaaaaatgttttacgctta-agttatgctgtttctgttgcgaaggctacagattgataataacaaagagaggtactattaagctagaatt |
32244625 |
T |
|
| Q |
413 |
tctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaagaagt |
512 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
32244624 |
tctactttaatcactacatacatctatatatttgagtctgagcaacactgttactgcttaatgaaaactgtaaatgaattaagtaaagtgaaaaagaagt |
32244525 |
T |
|
| Q |
513 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32244524 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
32244425 |
T |
|
| Q |
613 |
gtaaagataccaacaaatatacactctgtg |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32244424 |
gtaaagataccaacaaatatacactctgtg |
32244395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 32244972 - 32244800
Alignment:
| Q |
30 |
acaaaagggaattcaaacatgcactaaaaacactaaattgatttaaacatcaatggaaacaatcaacctgaattttctagaacttatttgaattcaaata |
129 |
Q |
| |
|
|||||||||||| |||| |||||| ||| |||| ||||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||| | |
|
|
| T |
32244972 |
acaaaagggaatccaaatatgcaccaaatgcactgcattgatttaaacatcaatgacaacaatcaacctgaattctctagagcttacttgaattcaaaca |
32244873 |
T |
|
| Q |
130 |
actggaaggtaaatattgaactttcagagcataaattttaagagtttaagttacatatgctctgatggggtaa |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||| |
|
|
| T |
32244872 |
actggaaggtaaatactgaactttcagagcataaattttaagagattaagttatatatgcactgatggtgtaa |
32244800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 32255186 - 32255138
Alignment:
| Q |
122 |
ttcaaataactggaaggtaaatattgaactttcagagcataaattttaa |
170 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32255186 |
ttcaaatacttgcaaggtaaatattgaactttcagagaataaattttaa |
32255138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 1635030 - 1634996
Alignment:
| Q |
302 |
gtgatttgattggatgcatgagtaaaaatgtttta |
336 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
1635030 |
gtgatttgattggatgcatgtgtaaaaatgtttta |
1634996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1747 times since January 2019
Visitors: 3462