View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0486_low_61 (Length: 215)
Name: NF0486_low_61
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_61 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 38184841 - 38185045
Alignment:
| Q |
1 |
atatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184841 |
atatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg |
38184940 |
T |
|
| Q |
101 |
tgatgatgt--ccat-ctcattgaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgc |
197 |
Q |
| |
|
||||| || |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184941 |
tgatgtagtcaccatgttcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgc |
38185040 |
T |
|
| Q |
198 |
cacct |
202 |
Q |
| |
|
||||| |
|
|
| T |
38185041 |
cacct |
38185045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 38180172 - 38180376
Alignment:
| Q |
1 |
atatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180172 |
atatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg |
38180271 |
T |
|
| Q |
101 |
tgatgatgt--ccat-ctcattgaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgc |
197 |
Q |
| |
|
||| | || |||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180272 |
tgacgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaactgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgc |
38180371 |
T |
|
| Q |
198 |
cacct |
202 |
Q |
| |
|
||||| |
|
|
| T |
38180372 |
cacct |
38180376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 38170359 - 38170562
Alignment:
| Q |
2 |
tatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgt |
101 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
38170359 |
tatttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgt |
38170458 |
T |
|
| Q |
102 |
gatgatgt--ccat-ctcattgaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgcc |
198 |
Q |
| |
|
|||| || || | |||| |||||||||||| | |||||||| |||||||| ||||||||||| || || | ||||||||||||||||||| ||||| |
|
|
| T |
38170459 |
gatgtagtcaccgtgttcatgaaagtaataatagaatatatcaaacaccgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgcc |
38170558 |
T |
|
| Q |
199 |
acct |
202 |
Q |
| |
|
|||| |
|
|
| T |
38170559 |
acct |
38170562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1523 times since January 2019
Visitors: 3457