View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0486_low_65 (Length: 204)

Name: NF0486_low_65
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0486_low_65
NF0486_low_65
[»] chr3 (3 HSPs)
chr3 (1-128)||(38180172-38180299)
chr3 (1-128)||(38184841-38184968)
chr3 (2-128)||(38170359-38170485)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 38180172 - 38180299
Alignment:
1 atatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38180172 atatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg 38180271  T
101 tgatgtagtcaccatgctcatgaaagta 128  Q
    ||| ||||||||||||||||||||||||    
38180272 tgacgtagtcaccatgctcatgaaagta 38180299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 38184841 - 38184968
Alignment:
1 atatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38184841 atatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttg 38184940  T
101 tgatgtagtcaccatgctcatgaaagta 128  Q
    |||||||||||||||| |||||||||||    
38184941 tgatgtagtcaccatgttcatgaaagta 38184968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 38170359 - 38170485
Alignment:
2 tatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgt 101  Q
    |||||||||  |||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||    
38170359 tatttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgt 38170458  T
102 gatgtagtcaccatgctcatgaaagta 128  Q
    |||||||||||| || |||||||||||    
38170459 gatgtagtcaccgtgttcatgaaagta 38170485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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