View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0486_low_7 (Length: 610)
Name: NF0486_low_7
Description: NF0486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0486_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 239 - 596
Target Start/End: Original strand, 20626454 - 20626808
Alignment:
| Q |
239 |
atatatttggcgtatgtcacgccattgctacaataataattagaaactactagaaattttaatcaattgcctataatcactttaccattccaatcaaaat |
338 |
Q |
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| T |
20626454 |
atatatttggcggatgtcacgccataactacaataataattagaaactactagaaattttaatcaattgccta--atcactttaccattccaatcaaaat |
20626551 |
T |
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| Q |
339 |
gaggcattttgtttactgttggagaatcttctttttcttttctgatcaattgaagcttcccttttatggtgaagagtcaaatttgaagctaatatgtagc |
438 |
Q |
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| T |
20626552 |
gaggcatcttgtttactgttggagaatcttctttttcctt-ctgatcaattgaagcttcccttttatggtgaagagtcaaatttgaagctaatatgtagc |
20626650 |
T |
|
| Q |
439 |
tatcacgttcatcnnnnnnnnctctttattgttagtgtttaagggagcatgtccaacataaattcttaatttaagtggcatttgcattggaaaaaataat |
538 |
Q |
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| T |
20626651 |
tatcacgttcatcttttttttctctttattgttagtgtttaagggagcatgtccaacataaattctcaatttaagtggcatttgcattgtaaaaaagaat |
20626750 |
T |
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| Q |
539 |
cataatctcttattactagagttcatcacattcacatgtgattattttttaacggatc |
596 |
Q |
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| T |
20626751 |
cataatctcttattaccagagttcatcacattcacatgtgattattttttaacggatc |
20626808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 20626309 - 20626418
Alignment:
| Q |
95 |
ctacacatctacttcgtaccgctggccacaaataagtggaatttcactttggagttttgtgtctttggagtaa-ttgcttaacannnnnnnngacgtgat |
193 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
20626309 |
ctacacatctacttcgcaccgctggccacaaataagtggaatttcactttggagttttgtgtctttggagtaatttgcttaacattttttttgacgtgat |
20626408 |
T |
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| Q |
194 |
gtttaacatt |
203 |
Q |
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|||||||||| |
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| T |
20626409 |
gtttaacatt |
20626418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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