View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0487_low_1 (Length: 723)
Name: NF0487_low_1
Description: NF0487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0487_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 32 - 716
Target Start/End: Original strand, 25380083 - 25380767
Alignment:
| Q |
32 |
cagtaaacatctttgttgctttatttactgcaattcattgcacatcttacgtggttccaaacatcttctttaccatcatccagtgattgttgttaccgtc |
131 |
Q |
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| T |
25380083 |
cagtaaacatctttgttgctttatttactgcaattcattgcacatcttacgtggttccaaacatcttctttaccatcatccagtgattgttgttaccgtc |
25380182 |
T |
|
| Q |
132 |
acttttaagccacgtgctgtactgtaaatagatttatatttgtattttaaaatatttatctgcagtggtggggatttctttcatgatgctggtgctaata |
231 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25380183 |
actttttagccacgtgctgtactgtaaatagatttatatttgtattttaaaatatttatctgcagtggtggggatttctttcatgatgccggtgctaata |
25380282 |
T |
|
| Q |
232 |
atgaagaggagacttttagttcagatgatgatggtcttagagaccaagaggatgatcaagctagtaaaaagtttgcgtcaactgtccctttatacaattc |
331 |
Q |
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| T |
25380283 |
atgaagaggagacttttagttcagatgatgatggtcttagagaccaagaggatgatcaagctagtaaaaagtttgcgtcaactgtccctttatacaattc |
25380382 |
T |
|
| Q |
332 |
ccattctttcagggacaagtcacctagggtaaaatggtcgaaacaagataccgaaaagttttatgaggtattcttcacacaattcttacaatatgacatt |
431 |
Q |
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| T |
25380383 |
ccattctttcagggacaagtcacctagggtaaaatggtcgaaacaagataccgaaaagttttatgaggtattcttcacataattcttacaatatgtcatt |
25380482 |
T |
|
| Q |
432 |
attatttctttaaacacaattatattactaattttttcttttctggatttaggaatggacacagattagtcatttttaataaaataactactcannnnnn |
531 |
Q |
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| T |
25380483 |
attatttctttaaacacaattatattactaattttgtcttttctggatttaggaatggagacagattagtcatttttaataaaataactattcatttttt |
25380582 |
T |
|
| Q |
532 |
naaaacataggctctgaaggagtttggcctagattttacaatgattcaacaaatttttgctagtaaaacaagacatcaaattaagctgaagttcaagaat |
631 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25380583 |
taaaacataggctctgaaggagtttggcctagattttacaatgattcaacaaatttttgctagtaaaacaagacgtcaaattaagctgaagttcaagaat |
25380682 |
T |
|
| Q |
632 |
gaagaccaacatcatcctttacgaataactgatgctattaatagtcgttcatcaggttaaactcttcagttacttgtctgtgctc |
716 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25380683 |
gaagaccaacatcatcctttacgaataactgatgctattaacagtcattcatcaggttaaactcttcagttacttgtctgtgctc |
25380767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 38332333 - 38332248
Alignment:
| Q |
318 |
cctttatacaattcccattctttcagggacaagtcacctagggtaaaatggtcgaaacaagataccgaaaagttttatgaggtatt |
403 |
Q |
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||||||| |||| ||| ||||||| ||||||| ||||||||| ||||||||| | || |||||| |||||||||||||||||||| |
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| T |
38332333 |
cctttattgaattaccagtctttcatggacaaggcacctaggggaaaatggtcaacacgagatactgaaaagttttatgaggtatt |
38332248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 336 - 403
Target Start/End: Complemental strand, 38340199 - 38340132
Alignment:
| Q |
336 |
tctttcagggacaagtcacctagggtaaaatggtcgaaacaagataccgaaaagttttatgaggtatt |
403 |
Q |
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||||||| ||||||| ||||||||| ||||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
38340199 |
tctttcaaggacaagacacctagggcaaaatggtcgaaacaagatactgaactgttctatgaggtatt |
38340132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 679
Target Start/End: Complemental strand, 38332095 - 38331968
Alignment:
| Q |
552 |
agtttggcctagattttacaatgattcaacaaatttttgctagtaaaacaagacatcaaattaagctgaagttcaagaatgaagaccaacatcatccttt |
651 |
Q |
| |
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|||||||| ||||||||| ||||| ||||| |||| || ||||||| | |||||||||||| |||||| |||||| ||||| | ||| |||||||| |
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| T |
38332095 |
agtttggcacagattttactatgatacaacagcttttccctgataaaacacgtcatcaaattaagttgaagtacaagaaggaagagcgacaacatccttt |
38331996 |
T |
|
| Q |
652 |
acgaataactgatgctattaatagtcgt |
679 |
Q |
| |
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|| |||||||||| || |||| |||| |
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| T |
38331995 |
actgttaactgatgccatgaataatcgt |
38331968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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